Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_D11
         (813 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0377 + 23613181-23613342,23614469-23614501,23614606-236148...    30   1.9  
06_01_0924 - 7131937-7132041,7132309-7132407,7132498-7132596,713...    30   2.5  
03_06_0323 + 33121062-33121653,33121748-33121839,33122482-331225...    29   3.3  
04_03_0376 + 15105874-15106230,15109207-15111573                       28   7.7  

>03_05_0377 +
           23613181-23613342,23614469-23614501,23614606-23614879,
           23615105-23615585,23616174-23616846
          Length = 540

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 290 HRYSEDGGKSFDTSRQHLQLYYKY 361
           +RY E+ G   DTSRQ +Q Y  Y
Sbjct: 339 NRYKEENGDKVDTSRQQMQRYTHY 362


>06_01_0924 -
           7131937-7132041,7132309-7132407,7132498-7132596,
           7132807-7132905,7133068-7133166,7133316-7133395,
           7133522-7133843
          Length = 300

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +1

Query: 736 RPDRLPPYPHHLRTDPEXXLPSGPG 810
           R  RLPP PHH    P   L  GPG
Sbjct: 6   RSPRLPPPPHHPSPPPPPLLSVGPG 30


>03_06_0323 +
           33121062-33121653,33121748-33121839,33122482-33122565,
           33123126-33123203,33123500-33123700,33123821-33123928,
           33124145-33124219,33124338-33124537,33124654-33124722,
           33125159-33125279,33126840-33127120,33127522-33127594
          Length = 657

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -1

Query: 741 RPRI*LXEAHDAXRWTRDRIDCRAGRHRALRPRQRHVGA 625
           RP + L E H A R  R+ + CRA R R   P+Q++  A
Sbjct: 29  RPALRLPELH-ATRRRRNNVACRATRAREAPPQQQNTAA 66


>04_03_0376 + 15105874-15106230,15109207-15111573
          Length = 907

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = -1

Query: 756 WWETIRPRI*LXEAHDAXRWTRDRIDCRAGR---HRALRPRQRHVGAPRLL 613
           +W ++R +    +A +A RW+   +D +  R   + ++ PR  H+G  +L+
Sbjct: 414 FWRSVRDKDFFSDAMEALRWSYQLLDEKVRRCFAYCSIFPRGHHLGRSKLI 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,409,937
Number of Sequences: 37544
Number of extensions: 302651
Number of successful extensions: 584
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)