Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_D10
         (843 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0095 + 15979884-15980234                                         32   0.66 
01_06_0310 - 28376378-28376607,28376789-28376897                       31   0.87 
11_01_0738 - 6218730-6220173,6221969-6223056                           31   1.5  
01_01_0118 - 871481-872606,872795-872950,873051-873817                 31   1.5  
08_02_0502 + 17844775-17845092,17845528-17845634,17846039-178464...    30   2.0  
03_02_0579 - 9606317-9606892,9607571-9607799,9607902-9608011,960...    29   3.5  
01_01_0103 - 773727-774737,774797-774813,774852-775078,777465-77...    29   3.5  
02_01_0182 + 1245577-1245670,1245928-1246017,1246258-1246290,124...    29   6.1  

>01_04_0095 + 15979884-15980234
          Length = 116

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -2

Query: 338 PVPAGSPRESHCCTLRARDDNNSKRLASRQTCH-QLYEELSAGRGRAGPC 192
           P P  SP  S CC  R+R    S  L +    H +L E +  G   AG C
Sbjct: 33  PCPGASPMASPCCRTRSRARTGSTSLGAVAHRHVELREGVGHGGDEAGAC 82


>01_06_0310 - 28376378-28376607,28376789-28376897
          Length = 112

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -3

Query: 475 NLRSDASLSHGEHHVAAAPARNASENVLIVCARWKEGHTGYMAVYNPSRQDLHA 314
           +L + A+     H  AA P R+      ++   W E   GY+ VY+    +L A
Sbjct: 6   SLLAAAAADDARHAQAAGPRRDDDHKAWLLRRAWHEAREGYVVVYDGGGNELSA 59


>11_01_0738 - 6218730-6220173,6221969-6223056
          Length = 843

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -1

Query: 381 QDGKRVTPVTWRCTTRPGRISTRISLLYPPCPGR*QFKTSRQPSNLSPT 235
           +DGK    V   C   P  +   I++LY  CP R    TS+ PSN + T
Sbjct: 312 RDGKHTAYVA--CLVAP--VVAYIAILYIACPSRSPSSTSKSPSNTNTT 356


>01_01_0118 - 871481-872606,872795-872950,873051-873817
          Length = 682

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 287 GHGGYSSEIRVEILPGRVVHRHVTGVTLFPSCTNDEYVLACVTRGRGRH 433
           G GGY S  +  +LPG  +H  +  +  + +C  +E++    T GR  H
Sbjct: 366 GQGGYGSVYKGVLLPGD-LHVAIKILNGYSNCNGEEFISEVATIGRIHH 413


>08_02_0502 +
           17844775-17845092,17845528-17845634,17846039-17846492,
           17846623-17846694,17846804-17846925,17847079-17847294,
           17847392-17847500,17847618-17847730,17847916-17848063,
           17848274-17848396
          Length = 593

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 227 LRIVGDKFDGWRDVLNCYRPGHGGYSSEIRVEILPGRVVHRHVTG 361
           + +VGD    W+D + C   G   Y +EIR+    G+  ++ + G
Sbjct: 470 VELVGDFTSNWKDKVKCDHKGGSRYEAEIRLR--HGKYYYKFIAG 512


>03_02_0579 -
           9606317-9606892,9607571-9607799,9607902-9608011,
           9608898-9609275,9609380-9609658,9610044-9610168,
           9610269-9610335,9610582-9612006
          Length = 1062

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 517 LSADENDTSLLDLVNLRSDASLSHGEH-HVAAAPARNASENVLI 389
           LS DEN   +  +  + +DAS++H EH +VA      A+  VL+
Sbjct: 435 LSMDENLQMIAKIAAVCNDASIAHSEHQYVATGMPTEAALKVLV 478


>01_01_0103 -
           773727-774737,774797-774813,774852-775078,777465-778237
          Length = 675

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 278 YRPGHGGYSSEIRVEILPGRVVHRHVTGVTLFPSCTNDEYVLACVTRGRGRH 433
           Y  G GGY S  +   LPG  VH  +  +    +C  ++++    T GR  H
Sbjct: 352 YSQGQGGYGSVYKGVFLPGD-VHVAIKMLDGNSNCNGEDFISEVATIGRIHH 402


>02_01_0182 +
           1245577-1245670,1245928-1246017,1246258-1246290,
           1246451-1246483,1246657-1246689,1246872-1246904,
           1247073-1247105,1247237-1247286
          Length = 132

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 453 NDASLRRFTRSKREVSFSSAESCFIFNKGAAG 548
           N  SL+    SKR + F SA SC IF  G +G
Sbjct: 34  NIFSLKYTPFSKRGLKFGSASSCPIFGSGRSG 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,308,550
Number of Sequences: 37544
Number of extensions: 362849
Number of successful extensions: 1030
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)