Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_D10
         (843 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) simil...    30   1.7  
At3g42410.1 68416.m04385 replication protein-related weak simila...    29   3.9  

>At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) similar
           to COP1-interacting protein 4 (CIP4) [Arabidopsis
           thaliana] GI:13160646; supporting cDNA
           gi|13160645|dbj|AB036832.1|;
          Length = 876

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = -3

Query: 460 ASLSHGEHHVAAAPARNASENVLIVCARWKEGHTGYMAVYNPSRQDLHANLTAVPSVPGT 281
           + LS GE    +   R   E  L V +   +GHTG +    P  Q +   L  V  + GT
Sbjct: 220 SGLSMGEKQQTSVTERLLEEKNLTVNSELVDGHTGGVVKEVPDNQTIKEALEKVDDLTGT 279

Query: 280 I 278
           I
Sbjct: 280 I 280


>At3g42410.1 68416.m04385 replication protein-related weak
           similarity to Replication Protein A 70  kDa DNA-binding
           subunit (RP-A) (RF-A) (Replication factor-A protein 1)
           (Single-stranded DNA-binding protein) (DMRPA1)
           (GI:2498844)(SP:Q24492) [Drosophila melanogaster]
          Length = 474

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 417 RVTQARTYSSFVQDGKRVTPVT-WRCTTRPGRISTRI 310
           R T    YSSF+ + K + P T WR + R  +IS ++
Sbjct: 82  RATSTTKYSSFIYEIKFIWPTTMWRVSPRSTQISLQV 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,198,371
Number of Sequences: 28952
Number of extensions: 269044
Number of successful extensions: 664
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)