Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_D09
         (795 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24152| Best HMM Match : PKD (HMM E-Value=4.1e-29)                   29   3.3  
SB_1968| Best HMM Match : PQQ (HMM E-Value=0.58)                       29   4.3  
SB_33345| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_24152| Best HMM Match : PKD (HMM E-Value=4.1e-29)
          Length = 1130

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 328 PAGTGCTPPCNRCDPLSIL 384
           P GT CT P N C P ++L
Sbjct: 344 PVGTSCTIPVNTCSPTNVL 362


>SB_1968| Best HMM Match : PQQ (HMM E-Value=0.58)
          Length = 529

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 301 PSVPGTITIQNVSPAVKLVTNYTKNYQPAEDVLVPAKSTVVV 176
           P+   T+ +QN+SP+V  +TN    +Q  E +   AK  ++V
Sbjct: 433 PAFKLTVNLQNISPSV-AITNLLITFQHDESLYALAKPCIIV 473


>SB_33345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 728

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
 Frame = -3

Query: 424 PARNASENVLIVCARWKEGHTG------YMAVYNPSRQDLHANLTAVP 299
           P +  + +V+  C  + +G  G      Y+ VY+P  +D+ A+  +VP
Sbjct: 136 PPKKIASDVMCACLAYNDGFQGVIILVDYLVVYSPGGEDMMAHPDSVP 183


>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2992

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 373  EGHTGYMAVYNPSRQDLHANLTAVPSVPGTITIQNVSPAVKLVTNYT 233
            E   G +  Y+ +  +L  NL    +VPG  T++ V   +++ TNYT
Sbjct: 2188 ELENGIITGYHINVYELSGNLKTNATVPGRGTLKGVVGGLEVWTNYT 2234


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,584,012
Number of Sequences: 59808
Number of extensions: 431392
Number of successful extensions: 1488
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1486
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)