Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_D08
(808 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 159 6e-40
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 70 4e-13
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 64 2e-11
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 59 8e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 57 3e-09
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 38 0.002
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 35 0.012
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 29 1.0
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.8
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 7.2
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 159 bits (385), Expect = 6e-40
Identities = 86/142 (60%), Positives = 92/142 (64%), Gaps = 1/142 (0%)
Frame = -2
Query: 750 LEXXTEFPDGQVITIGNERXXCPXAXFQPXXXGYGSXXASTRPHITPS*SATWTSVRTXX 571
LE E PDGQVITIGNER P A FQP G + A S +R
Sbjct: 236 LEKSYELPDGQVITIGNERFRAPEALFQPSALGLEN--AGIHEATYNSIMKCDVDIRKDL 293
Query: 570 XXXXXXXXXXXXP-GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQ 394
GIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQ
Sbjct: 294 YGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQ 353
Query: 393 QMWISKQEYDESGPSIVHRKCF 328
QMWISKQEYDESGP IV+RKCF
Sbjct: 354 QMWISKQEYDESGPGIVYRKCF 375
Score = 66.9 bits (156), Expect = 3e-12
Identities = 37/84 (44%), Positives = 42/84 (50%)
Frame = -1
Query: 784 QEVATXASXXSLGXXYXIXXXXXXXXXXXXXPLPXGXLPTXVXXVWKXXGIHETTYNSIM 605
QE+ T A SL Y + P + + GIHE TYNSIM
Sbjct: 225 QELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGL-ENAGIHEATYNSIM 283
Query: 604 KCDVDIRKDLYPNTVLSGGTTHVP 533
KCDVDIRKDLY N V+SGGTT P
Sbjct: 284 KCDVDIRKDLYGNVVMSGGTTMYP 307
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 69.7 bits (163), Expect = 4e-13
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 1/137 (0%)
Frame = -2
Query: 735 EFPDGQVITIGNERXXCPXAXFQPXXXGYGSXXASTRPHITPS*SATWTSVR-TXXXXXX 559
+ PD Q IT+G E P F P G S + + S + +R T
Sbjct: 246 QLPDNQTITLGTECFSAPEVLFNPEMMG--SEASGLHIQLFKSILLSDIDLRSTLYSNIV 303
Query: 558 XXXXXXXXPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 379
G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+
Sbjct: 304 LSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLIT 363
Query: 378 KQEYDESGPSIVHRKCF 328
+EY ++ +++ R+ F
Sbjct: 364 SEEY-KNDQNVIFRRRF 379
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 64.5 bits (150), Expect = 2e-11
Identities = 32/73 (43%), Positives = 50/73 (68%), Gaps = 6/73 (8%)
Frame = -2
Query: 531 GIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYDE 361
G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E
Sbjct: 361 GFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQLWISRQEYEE 419
Query: 360 SGP---SIVHRKC 331
G +++ ++C
Sbjct: 420 HGSDRLALIEKRC 432
Score = 34.7 bits (76), Expect = 0.016
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -1
Query: 637 GIHETTYNSIMKCDVDIRKDLYPNTVLSGGTT 542
GI + N I +CDVDIR L N ++ GGT+
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTS 357
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -2
Query: 747 EXXTEFPDGQVITIGNERXXCPXAXFQP 664
E EFPDG + G ER P F P
Sbjct: 261 ESEFEFPDGSRMMFGAERYQIPEHLFVP 288
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 58.8 bits (136), Expect = 8e-10
Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Frame = -2
Query: 729 PDGQVITIGNERXXCPXAXFQPXXXGYGSXXASTRPHITPS*SATWTSVRTXXXXXXXXX 550
PDG+VI +G+ER CP FQP G S I + A +R
Sbjct: 243 PDGRVIKVGSERYECPECLFQPHLVG--SEQPGLSEFIFDTIQAADVDIRKYLYRAIVLS 300
Query: 549 XXXXXP-GIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGSILAS- 409
G+ R++KEI L P+ + K+KI P R+++V+IGG++LA
Sbjct: 301 GGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADI 360
Query: 408 LSTFQQMWISKQEYDESG 355
++ MW+SK E++E G
Sbjct: 361 MAQNDHMWVSKAEWEEYG 378
Score = 34.7 bits (76), Expect = 0.016
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = -1
Query: 637 GIHETTYNSIMKCDVDIRKDLYPNTVLSGGTT 542
G+ E +++I DVDIRK LY VLSGG++
Sbjct: 273 GLSEFIFDTIQAADVDIRKYLYRAIVLSGGSS 304
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 56.8 bits (131), Expect = 3e-09
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Frame = -2
Query: 531 GIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLSTFQQMWISKQEYDES 358
G+++R+Q E+ LA S + + +VW GGSILASL FQ +W+SKQEYDE
Sbjct: 358 GLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWVSKQEYDEV 417
Query: 357 G 355
G
Sbjct: 418 G 418
Score = 41.9 bits (94), Expect = 1e-04
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = -1
Query: 637 GIHETTYNSIMKCDVDIRKDLYPNTVLSGGTTHVP 533
G+HE Y SI+ CD ++R L N V++GGT+ +P
Sbjct: 323 GLHELVYQSILACDSELRSPLLNNIVVTGGTSLIP 357
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -2
Query: 474 IKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 337
+ +I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 374 VNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
Score = 33.1 bits (72), Expect = 0.048
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 628 ETTYNSIMKCDVDIRKDLYPNTVLSGGTT 542
E N + +D+RK LY N VLSGG+T
Sbjct: 309 ELVDNVVQSSPIDVRKGLYKNIVLSGGST 337
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 35.1 bits (77), Expect = 0.012
Identities = 15/63 (23%), Positives = 30/63 (47%)
Frame = -2
Query: 531 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 352
G+ R+++E+T++ P I + W G S + F+ ++++EY E GP
Sbjct: 649 GMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGP 708
Query: 351 SIV 343
+
Sbjct: 709 EYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -2
Query: 531 GIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYDE 361
G A +++ I + + I +I PP + ++ W G I + ++WI ++
Sbjct: 544 GFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWIKNSDWKM 603
Query: 360 SGPSIVHRK 334
G ++ K
Sbjct: 604 LGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -2
Query: 435 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 334
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 510 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 400
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,649,191
Number of Sequences: 5004
Number of extensions: 49602
Number of successful extensions: 151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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