Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_D08
         (808 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             132   5e-33

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  132 bits (318), Expect = 5e-33
 Identities = 77/127 (60%), Positives = 80/127 (62%), Gaps = 3/127 (2%)
 Frame = -2

Query: 750 LEXXTEFPDGQVITIGNERXXCPXAXFQPXXXGYGSXXASTRPHITPS*SATWTSV---R 580
           LE   E PDGQVITIGNER  CP A FQP   G  +       H T   S     V   +
Sbjct: 11  LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGI----HETTYNSIMKCDVDIRK 66

Query: 579 TXXXXXXXXXXXXXXPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 400
                          PGIADRMQKEITALAPSTMKIKIIAPPE+KYSVWIGGSILASLST
Sbjct: 67  DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLST 126

Query: 399 FQQMWIS 379
           FQQMWIS
Sbjct: 127 FQQMWIS 133



 Score = 73.3 bits (172), Expect = 2e-15
 Identities = 41/83 (49%), Positives = 45/83 (54%)
 Frame = -1

Query: 781 EVATXASXXSLGXXYXIXXXXXXXXXXXXXPLPXGXLPTXVXXVWKXXGIHETTYNSIMK 602
           E+AT AS  SL   Y +               P          + +  GIHETTYNSIMK
Sbjct: 1   EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM-EACGIHETTYNSIMK 59

Query: 601 CDVDIRKDLYPNTVLSGGTTHVP 533
           CDVDIRKDLY NTVLSGGTT  P
Sbjct: 60  CDVDIRKDLYANTVLSGGTTMYP 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,030
Number of Sequences: 438
Number of extensions: 3833
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)