Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_D07
(777 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 331 7e-92
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 327 9e-91
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 139 4e-34
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 79 7e-16
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.24
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.3
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 1.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.7
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 2.3
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.2
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 6.9
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 25 9.2
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 9.2
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 331 bits (813), Expect = 7e-92
Identities = 156/214 (72%), Positives = 175/214 (81%), Gaps = 1/214 (0%)
Frame = -3
Query: 775 NRLIGQIVSSITASLRFDGALNXDLTEFQTNLVPYPPYPLPTGHVRASHLCREGLXMNSF 596
NRLI Q+VSSITASLRF G+LN DL EFQTNLVPYP P V S + +
Sbjct: 232 NRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPL--VTYSPIVSAAKAFHES 289
Query: 595 PS-PEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 419
S EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVD
Sbjct: 290 NSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVD 349
Query: 418 WCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFV 239
WCPTGFK+GI Y+PP VPG +AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFV
Sbjct: 350 WCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFV 409
Query: 238 HWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 137
HWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 410 HWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 443
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 327 bits (804), Expect = 9e-91
Identities = 154/213 (72%), Positives = 172/213 (80%)
Frame = -3
Query: 775 NRLIGQIVSSITASLRFDGALNXDLTEFQTNLVPYPPYPLPTGHVRASHLCREGLXMNSF 596
NRLI Q+VSSITASLRF+G+LN DL EFQTNLVPYP P A + S
Sbjct: 228 NRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLV-TYAPIVSAAKAFHESN 286
Query: 595 PSPEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDW 416
EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDW
Sbjct: 287 SVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDW 346
Query: 415 CPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVH 236
CPTGFK+GI +PP + G ++AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVH
Sbjct: 347 CPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVH 406
Query: 235 WYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 137
WYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 439
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 139 bits (337), Expect = 4e-34
Identities = 77/216 (35%), Positives = 117/216 (54%), Gaps = 4/216 (1%)
Frame = -3
Query: 775 NRLIGQIVSSITASLRFDGALNXDLTEFQTNLVPYPPYPLPTGHVRASHLCREGLX-MNS 599
N L+ +++ +T S RF G LN DL + N+VP+P L V + L G +
Sbjct: 226 NHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPR--LHFFMVGFAPLAAIGSSSFQA 283
Query: 598 FPSPEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 419
PE+T F+ N MV DPRHG+Y+ L+RG V K+V+ I +++TK + FV+
Sbjct: 284 VSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVE 343
Query: 418 WCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFV 239
W P + PP DL + + + N+T+I E + RL +F M+ ++AF+
Sbjct: 344 WIPDNVLKAVCSVPPK-----DL---KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFL 395
Query: 238 HWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGMD 140
HWY GEGM+E EF+EA DL + + Y+E G+D
Sbjct: 396 HWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 79.0 bits (186), Expect = 7e-16
Identities = 53/213 (24%), Positives = 104/213 (48%), Gaps = 6/213 (2%)
Frame = -3
Query: 775 NRLIGQIVSSITASLRFDGALNXDLTEFQTNLVPYPP-YPLPTGHVR-ASHLCREGLXMN 602
N+L+ ++S+ T +LR+ G +N DL +L+P P + L T + + E +
Sbjct: 229 NQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIR 288
Query: 601 SFPSPEITNACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQF 425
++ P NQMV +P + +++ + +G+ P DV+ ++ I+ +R F
Sbjct: 289 KTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASF 348
Query: 424 VDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRA 245
+ W P +V ++ + P + ++ + ML+N T+IA + R ++D + + A
Sbjct: 349 IPWGPASIQVALSKKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNA 403
Query: 244 FVHWYVGEGMEE---GEFSEAREDLAALEKDYE 155
F+ Y E + E EF +R+ +A L +YE
Sbjct: 404 FLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 30.7 bits (66), Expect = 0.24
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 495 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 361
VV P + RP++P P LS V PV+ V + PP P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -3
Query: 583 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 458
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -1
Query: 291 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 118
G+ TS TS T S S++ S+P P W P+ S+ TP+ V
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207
Query: 117 EPKSTK 100
EP+ TK
Sbjct: 208 EPRFTK 213
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 1.7
Identities = 21/79 (26%), Positives = 33/79 (41%)
Frame = -1
Query: 609 P*TAFRRPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLS 430
P T+ P + T+ ++ + +TPV ++ CT TS P T + S P +
Sbjct: 414 PPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPY--TSTPVTSTPLTTT 471
Query: 429 NSSTGVQPVSRSVSTTSHP 373
N +T S TS P
Sbjct: 472 NCTTSTSIPYTSTPVTSTP 490
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 455 SDGRVHILGYDVTTVQHTASHVLAMTGVAFHHLVGGLEACVCDLGRRKAV 604
S G +LGY ++ A++V+A + V HL+ G D K +
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESKGL 456
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -1
Query: 459 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 373
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 478 WVRRHHGTAYSKPCTCHDGG 537
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 25.4 bits (53), Expect = 9.2
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Frame = -3
Query: 691 QTNLVPYPPYPLPTGHVRASHLCREG----LXMNSFPSPEITNACFEP 560
QTNL P + P H SHL + L +S PSP + +P
Sbjct: 259 QTNLQLAPSFAAPQAHPLPSHLSQSNVPPQLSHSSVPSPAPPRSVSQP 306
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -1
Query: 462 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 367
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,090,757
Number of Sequences: 5004
Number of extensions: 66992
Number of successful extensions: 253
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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