Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_D06
         (843 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    26   0.32 
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    26   0.32 
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    26   0.32 
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    26   0.32 
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    24   1.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   4.0  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   7.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   7.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   7.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   7.0  

>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 643 APVISAEKAYHEQLS-VAEITNACFEPAKPDGEMRP 539
           A +  A + YH+  S V +  N+C +PA P G+  P
Sbjct: 93  ASMAVAAQFYHQAASAVVDPLNSCSQPAAPGGQPIP 128


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 643 APVISAEKAYHEQLS-VAEITNACFEPAKPDGEMRP 539
           A +  A + YH+  S V +  N+C +PA P G+  P
Sbjct: 152 ASMAVAAQFYHQAASAVVDPLNSCSQPAAPGGQPIP 187


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
           protein.
          Length = 150

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 643 APVISAEKAYHEQLS-VAEITNACFEPAKPDGEMRP 539
           A +  A + YH+  S V +  N+C +PA P G+  P
Sbjct: 93  ASMAVAAQFYHQAASAVVDPLNSCSQPAAPGGQPIP 128


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 643 APVISAEKAYHEQLS-VAEITNACFEPAKPDGEMRP 539
           A +  A + YH+  S V +  N+C +PA P G+  P
Sbjct: 152 ASMAVAAQFYHQAASAVVDPLNSCSQPAAPGGQPIP 187


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 486 YDVTTGTAYSKPCTCHDGGRISPSGLAGS 572
           ++   G A++ P   HD G  SP G  G+
Sbjct: 45  FNSPAGNAHTGPTGTHDAGFPSPRGALGA 73


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 122 PHPRLQRSPCRLLRNPSRGQPGP 190
           PHP L   P  L  +P+   PGP
Sbjct: 232 PHPGLSPHPPHLSSHPAIVTPGP 254


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 122 PHPRLQRSPCRLLRNPSRGQPGP 190
           PHP L   P  L  +P+   PGP
Sbjct: 124 PHPGLSPHPPHLSSHPAIVTPGP 146


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 672  PVSTSHWSRTRQSSLPRRPT 613
            P +T+HW     +S   RPT
Sbjct: 1177 PSTTNHWQTKTTTSTTTRPT 1196



 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 457  PSKPSVLSNSSTGVQPVSRSVSTTSHP 377
            P+KPS    S+T       + STT+ P
Sbjct: 1169 PTKPSYRPPSTTNHWQTKTTTSTTTRP 1195


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = -2

Query: 536  VMASTWLAVCCT--RGDVVPKDV--NAAIATIKTKRTIQFVD 423
            ++AST L +CCT  + ++ P  +    A+  +K  + +Q +D
Sbjct: 1356 ILASTELNLCCTKKKEELSPNALLDKQAVEIVKQLQKLQGID 1397


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = -2

Query: 536  VMASTWLAVCCT--RGDVVPKDV--NAAIATIKTKRTIQFVD 423
            ++AST L +CCT  + ++ P  +    A+  +K  + +Q +D
Sbjct: 1356 ILASTELNLCCTKKKEELSPNALLDKQAVEIVKQLQKLQGID 1397


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = -2

Query: 536  VMASTWLAVCCT--RGDVVPKDV--NAAIATIKTKRTIQFVD 423
            ++AST L +CCT  + ++ P  +    A+  +K  + +Q +D
Sbjct: 1356 ILASTELNLCCTKKKEELSPNALLDKQAVEIVKQLQKLQGID 1397


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = -2

Query: 536  VMASTWLAVCCT--RGDVVPKDV--NAAIATIKTKRTIQFVD 423
            ++AST L +CCT  + ++ P  +    A+  +K  + +Q +D
Sbjct: 1356 ILASTELNLCCTKKKEELSPNALLDKQAVEIVKQLQKLQGID 1397


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,505
Number of Sequences: 336
Number of extensions: 4321
Number of successful extensions: 26
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23244256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)