Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_D05
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...   124   1e-29
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    65   1e-11
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    29   1.1  

>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score =  124 bits (300), Expect = 1e-29
 Identities = 57/95 (60%), Positives = 70/95 (73%)
 Frame = -3

Query: 684 PVHALLYVLFMXGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYI 505
           P+H L+YV F   +CA FSK WI+VSG+S +DVAKQLK QQ+VM GHR+ SM  EL R I
Sbjct: 358 PIHTLVYVFFTMFACALFSKLWIEVSGASPRDVAKQLKSQQLVMAGHREGSMYKELKRII 417

Query: 504 PTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVT 400
           PTAA   G  +GAL+V +D LGA+GSGT +LL  T
Sbjct: 418 PTAAWLSGAVVGALAVASDLLGALGSGTAVLLCTT 452


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 65.3 bits (152), Expect = 1e-11
 Identities = 32/99 (32%), Positives = 53/99 (53%)
 Frame = -3

Query: 684 PVHALLYVLFMXGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYI 505
           PVH ++Y + +     +FS  W++ +    +DV    KE Q+V+ G+R+ +M+ EL + I
Sbjct: 362 PVHTVIYTITLICITIYFSLLWMNATAGGPRDVLLFFKENQLVIAGYREATMLKELEKII 421

Query: 504 PTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTITLA 388
           P AA      +  LSV+A    A   G G+L+A  +  A
Sbjct: 422 PIAAKLSAFFVSILSVIAGIF-ASTFGVGVLIASALVYA 459


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 625 DLDRCVWLLSQRCGETTEGTAD 560
           +LD+CVW L + C E  E  +D
Sbjct: 378 ELDKCVWFLLKNCDEFIENFSD 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,970,003
Number of Sequences: 5004
Number of extensions: 27840
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)