Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_D05
         (839 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.)             128   6e-30
SB_44680| Best HMM Match : Gemini_V1 (HMM E-Value=4)                   31   0.88 
SB_55670| Best HMM Match : zf-C2H2 (HMM E-Value=1.6e-29)               31   1.2  
SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)               30   2.0  
SB_39464| Best HMM Match : 7tm_1 (HMM E-Value=4e-39)                   29   3.6  
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_58061| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1084

 Score =  128 bits (309), Expect = 6e-30
 Identities = 61/64 (95%), Positives = 63/64 (98%)
 Frame = -3

Query: 588  VAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILL 409
            VAKQLK+QQMVMRGHRD SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILL
Sbjct: 998  VAKQLKDQQMVMRGHRDKSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILL 1057

Query: 408  AVTI 397
            AVTI
Sbjct: 1058 AVTI 1061


>SB_44680| Best HMM Match : Gemini_V1 (HMM E-Value=4)
          Length = 248

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 592 RCGETTEGTADGDARSPRQLHDPRTEPLHPD 500
           R G  +  T    AR P++ HD RT  +HPD
Sbjct: 185 RVGGVSRSTHRDAARGPKERHDGRTRAVHPD 215


>SB_55670| Best HMM Match : zf-C2H2 (HMM E-Value=1.6e-29)
          Length = 637

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
 Frame = -2

Query: 577 TEGTADGDARSPRQ---LHDPRTEPLHPDGGRVRRTVHRGSVSAGRLPRGHRLRHWDTAR 407
           TE T    A  PR     H P   PLHP+     +  HR   +    P G     +  A 
Sbjct: 285 TESTNPRGATVPRHHNMFHGPVVHPLHPNHYSSLQEPHRDGGNGS--PHG----FFSVAH 338

Query: 406 RHHHPSHYKXDSRAIXQCVR 347
            H  P+HY  ++ ++ Q  R
Sbjct: 339 AHDPPAHYPQNASSLSQAYR 358


>SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)
          Length = 851

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 419 PVPEPMAPRKSASTDR-APMHSPPNAAAV 502
           P+ EP AP  +  T   AP+ SPP+AAAV
Sbjct: 262 PLAEPPAPPPTTPTSAGAPLSSPPSAAAV 290


>SB_39464| Best HMM Match : 7tm_1 (HMM E-Value=4e-39)
          Length = 375

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = -2

Query: 631 FKDLDRCVWLLSQRCGETTEGTADGDARSPRQLHDPRTEPLHPDGGRVRRTVHRGSVSAG 452
           FKD+ +C W L+ R G +   +    +RSP        EP   +   +  +  +G V+ G
Sbjct: 305 FKDMVKCRWHLTIRRGSSRRSSRKTTSRSPNSFQLDSIEPEAENMVSISPSWKQGQVNNG 364

Query: 451 R 449
           +
Sbjct: 365 K 365


>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3176

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/54 (24%), Positives = 21/54 (38%)
 Frame = +2

Query: 341  VRSDALXNCT*IXFVMARVMVTASSIPVPEPMAPRKSASTDRAPMHSPPNAAAV 502
            V  D+   CT +     R  +T   +P P P+ P     T +     PP   ++
Sbjct: 1744 VERDSPVRCTAVTSTSPRYGITTGLVPKPPPLMPITGTKTSQEASPKPPAVLSI 1797


>SB_58061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 532 HDPRTEPLHPDGGRVRRTVHRGSVSAGRLPRGHRL 428
           HDP+  P  P G +  RTVHR +++      G  L
Sbjct: 7   HDPQRTPRTPLGLKAERTVHRVTLNPSTASPGETL 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,233,891
Number of Sequences: 59808
Number of extensions: 264760
Number of successful extensions: 1110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)