Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_D05
(839 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK022027-1|BAB13955.1| 234|Homo sapiens protein ( Homo sapiens ... 188 2e-47
AK001440-1|BAA91692.1| 234|Homo sapiens protein ( Homo sapiens ... 188 2e-47
AF346603-1|AAK29084.1| 476|Homo sapiens Sec61 alpha form 2 prot... 188 2e-47
AL831940-1|CAD38592.1| 215|Homo sapiens hypothetical protein pr... 188 3e-47
AK075148-1|BAC11434.1| 170|Homo sapiens protein ( Homo sapiens ... 188 3e-47
AK074928-1|BAC11298.1| 356|Homo sapiens protein ( Homo sapiens ... 188 3e-47
AK074907-1|BAC11283.1| 170|Homo sapiens protein ( Homo sapiens ... 188 3e-47
AF346602-1|AAK29083.1| 476|Homo sapiens Sec61 alpha form 1 prot... 188 3e-47
AF084458-1|AAD39847.1| 476|Homo sapiens sec61 homolog protein. 188 3e-47
AK022640-1|BAB14148.1| 437|Homo sapiens protein ( Homo sapiens ... 113 8e-25
BC026179-1|AAH26179.1| 418|Homo sapiens SEC61A2 protein protein. 111 3e-24
AK125672-1|BAC86239.1| 203|Homo sapiens protein ( Homo sapiens ... 31 5.2
>AK022027-1|BAB13955.1| 234|Homo sapiens protein ( Homo sapiens
cDNA FLJ11965 fis, clone HEMBB1001112, moderately
similar to Homo sapiens sec61 homolog mRNA. ).
Length = 234
Score = 188 bits (458), Expect = 2e-47
Identities = 87/96 (90%), Positives = 93/96 (96%)
Frame = -3
Query: 684 PVHALLYVLFMXGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYI 505
PVH ++Y++FM GSCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHRD SM+HELNRYI
Sbjct: 116 PVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYI 175
Query: 504 PTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 397
PTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI
Sbjct: 176 PTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 211
>AK001440-1|BAA91692.1| 234|Homo sapiens protein ( Homo sapiens
cDNA FLJ10578 fis, clone NT2RP2003433, highly similar to
PROTEIN TRANSPORT PROTEIN SEC61 ALPHA SUBUNIT. ).
Length = 234
Score = 188 bits (458), Expect = 2e-47
Identities = 87/96 (90%), Positives = 93/96 (96%)
Frame = -3
Query: 684 PVHALLYVLFMXGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYI 505
PVH ++Y++FM GSCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHRD SM+HELNRYI
Sbjct: 116 PVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYI 175
Query: 504 PTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 397
PTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI
Sbjct: 176 PTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 211
>AF346603-1|AAK29084.1| 476|Homo sapiens Sec61 alpha form 2
protein.
Length = 476
Score = 188 bits (458), Expect = 2e-47
Identities = 87/96 (90%), Positives = 93/96 (96%)
Frame = -3
Query: 684 PVHALLYVLFMXGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYI 505
PVH ++Y++FM GSCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHRD SM+HELNRYI
Sbjct: 358 PVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYI 417
Query: 504 PTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 397
PTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI
Sbjct: 418 PTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 453
>AL831940-1|CAD38592.1| 215|Homo sapiens hypothetical protein
protein.
Length = 215
Score = 188 bits (457), Expect = 3e-47
Identities = 87/96 (90%), Positives = 94/96 (97%)
Frame = -3
Query: 684 PVHALLYVLFMXGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYI 505
PVHA++Y++FM GSCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHR+ SM+HELNRYI
Sbjct: 97 PVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYI 156
Query: 504 PTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 397
PTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI
Sbjct: 157 PTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 192
>AK075148-1|BAC11434.1| 170|Homo sapiens protein ( Homo sapiens
cDNA FLJ90667 fis, clone PLACE1005410, highly similar to
Protein transport protein Sec61 alpha subunitisoform 1.
).
Length = 170
Score = 188 bits (457), Expect = 3e-47
Identities = 87/96 (90%), Positives = 94/96 (97%)
Frame = -3
Query: 684 PVHALLYVLFMXGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYI 505
PVHA++Y++FM GSCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHR+ SM+HELNRYI
Sbjct: 52 PVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYI 111
Query: 504 PTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 397
PTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI
Sbjct: 112 PTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 147
>AK074928-1|BAC11298.1| 356|Homo sapiens protein ( Homo sapiens
cDNA FLJ90447 fis, clone NT2RP3001240, highly similar to
Canis familiaris sec61 homologue mRNA. ).
Length = 356
Score = 188 bits (457), Expect = 3e-47
Identities = 87/96 (90%), Positives = 94/96 (97%)
Frame = -3
Query: 684 PVHALLYVLFMXGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYI 505
PVHA++Y++FM GSCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHR+ SM+HELNRYI
Sbjct: 238 PVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYI 297
Query: 504 PTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 397
PTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI
Sbjct: 298 PTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 333
>AK074907-1|BAC11283.1| 170|Homo sapiens protein ( Homo sapiens
cDNA FLJ90426 fis, clone NT2RP3000460, highly similar to
Protein transport protein Sec61 alpha subunitisoform 1.
).
Length = 170
Score = 188 bits (457), Expect = 3e-47
Identities = 87/96 (90%), Positives = 94/96 (97%)
Frame = -3
Query: 684 PVHALLYVLFMXGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYI 505
PVHA++Y++FM GSCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHR+ SM+HELNRYI
Sbjct: 52 PVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYI 111
Query: 504 PTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 397
PTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI
Sbjct: 112 PTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 147
>AF346602-1|AAK29083.1| 476|Homo sapiens Sec61 alpha form 1
protein.
Length = 476
Score = 188 bits (457), Expect = 3e-47
Identities = 87/96 (90%), Positives = 94/96 (97%)
Frame = -3
Query: 684 PVHALLYVLFMXGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYI 505
PVHA++Y++FM GSCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHR+ SM+HELNRYI
Sbjct: 358 PVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYI 417
Query: 504 PTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 397
PTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI
Sbjct: 418 PTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 453
>AF084458-1|AAD39847.1| 476|Homo sapiens sec61 homolog protein.
Length = 476
Score = 188 bits (457), Expect = 3e-47
Identities = 87/96 (90%), Positives = 94/96 (97%)
Frame = -3
Query: 684 PVHALLYVLFMXGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYI 505
PVHA++Y++FM GSCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHR+ SM+HELNRYI
Sbjct: 358 PVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYI 417
Query: 504 PTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 397
PTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI
Sbjct: 418 PTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 453
>AK022640-1|BAB14148.1| 437|Homo sapiens protein ( Homo sapiens
cDNA FLJ12578 fis, clone NT2RM4001054, moderately
similar to Homo sapiens sec61 homolog mRNA. ).
Length = 437
Score = 113 bits (272), Expect = 8e-25
Identities = 49/58 (84%), Positives = 55/58 (94%)
Frame = -3
Query: 684 PVHALLYVLFMXGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNR 511
PVH ++Y++FM GSCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHRD SM+HELNR
Sbjct: 358 PVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNR 415
>BC026179-1|AAH26179.1| 418|Homo sapiens SEC61A2 protein protein.
Length = 418
Score = 111 bits (267), Expect = 3e-24
Identities = 48/57 (84%), Positives = 54/57 (94%)
Frame = -3
Query: 684 PVHALLYVLFMXGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELN 514
PVH ++Y++FM GSCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHRD SM+HELN
Sbjct: 358 PVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELN 414
>AK125672-1|BAC86239.1| 203|Homo sapiens protein ( Homo sapiens
cDNA FLJ43684 fis, clone TBAES2001492. ).
Length = 203
Score = 31.1 bits (67), Expect = 5.2
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +3
Query: 426 RSRWPRGSRPALTEPRCTVLRT---RPPSGCSGS 518
RS WP GSRP + P T T P S CSGS
Sbjct: 26 RSWWPLGSRPLASVPSTTWAPTPSASPSSSCSGS 59
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,136,421
Number of Sequences: 237096
Number of extensions: 1389136
Number of successful extensions: 4442
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4435
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10593928420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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