Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_D03
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    27   4.1  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    26   7.1  
SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces p...    26   7.1  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.1  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   9.4  
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo...    25   9.4  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    25   9.4  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   9.4  

>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -3

Query: 263 RPGSLTIRKETSNACYSPLFRKSIIIRLQMSPATAFSMC 147
           RP  L      S+ CYSP   +  +  L  SPA + S C
Sbjct: 100 RPNELFKTSSMSSDCYSPQKSRESLNSLCHSPAPSVSSC 138


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 332 EPLRDRPRGHQAGIPREVRQVPWRPGSLTIRKE 234
           +PL+ R R H+ G PR     P  P S T RKE
Sbjct: 10  KPLKKRSRAHRLGDPRFYCTYPDCPKSFT-RKE 41


>SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 111

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 284 LEECLLDVP*VDLGAAHHDADERLVVGADALHRVVQALSEET 409
           LEE  L+     L A+ +D D+   +    ++ V+ AL++ET
Sbjct: 10  LEEICLEAAQPVLKASEYDGDKTAEMNQSVIYAVLNALNKET 51


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +3

Query: 294 ACLMSPRSISERLTTMRMSVLSLVPMPFIE*YRRSAKKPTLLFTHLAIASMPF 452
           A L   R+I +  T++ ++V  L+P+P  +  +  AK    + +H+    +PF
Sbjct: 102 AILKEKRNILQDKTSVNVNVNKLIPIPKKKVLKNRAKSLLSIKSHVHFHLIPF 154


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 615 PPLVKVDGEPTNQSSTPSLSLAPISS*DRSSP 520
           P   K +G P+N    PSL   P  S  +S+P
Sbjct: 316 PSSPKTEGAPSNAQFRPSLPATPNGSVPQSNP 347


>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 275 QVPWRPGSLTIRKETSNACYSPLFRKSI 192
           ++PWR   +  R+  ++ CYSP+F   +
Sbjct: 30  ELPWR---ILARRSGADLCYSPMFHSRL 54


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = -1

Query: 553 RSYQQLRQIFAEYEALTGKDIEDSIKKEFSGSIEKGMLAIAKCVKSKVGFFAERLYYSMK 374
           +SY QLR+   E       D  D I +  +   + G +A+  C+ S    F   LY +MK
Sbjct: 249 QSYVQLRKPLLENNLPYEIDGFDKILQCANSEADIGWIAMIHCIGSNGYAFPIHLYLNMK 308


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 763  TTVRQEPGXGLKRRHVG 713
            T +  +PG  LK+RH+G
Sbjct: 1174 TNIEHDPGCTLKKRHIG 1190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,939,245
Number of Sequences: 5004
Number of extensions: 57511
Number of successful extensions: 167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)