Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_D02
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar...    42   8e-05
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar...    28   1.4  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   2.5  
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch...    26   5.7  

>SPAC222.11 |hem13||coproporphyrinogen III oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 312

 Score = 42.3 bits (95), Expect = 8e-05
 Identities = 18/32 (56%), Positives = 22/32 (68%)
 Frame = -1

Query: 600 RGTKFGXHTXEARYESILMSLPLNAKWEYMHQ 505
           RGT FG    E R ESILM+LPL+A W Y ++
Sbjct: 261 RGTWFGLQAPEPRVESILMTLPLHASWRYKYE 292


>SPAC24C9.09 |||mitochondrial threonine-tRNA
           ligase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = -1

Query: 156 LRMFI*MDS*IFAS--WLRDKIRNLESCQNQIFSVLAVNKLVLW 31
           LR F   D  IF S   ++D+I+N  +   Q++S+L +NKL L+
Sbjct: 188 LRCFHQDDGHIFCSPESIKDEIKNTLTFVKQVYSLLGMNKLKLY 231


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 369 SKSILIFTIILFALCIRPLFILYLKPIFXV 458
           +K I  FTI +   CI PL +L+   +F V
Sbjct: 581 NKLIYFFTIAICYACINPLVLLFASVLFCV 610


>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +3

Query: 45  YLQPVQKIFDFDMIPSF 95
           Y+Q +++IFDFD+I SF
Sbjct: 185 YVQLMKEIFDFDLIRSF 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,531,380
Number of Sequences: 5004
Number of extensions: 49102
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)