Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_D02
         (828 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33974| Best HMM Match : Coprogen_oxidas (HMM E-Value=0)             57   2e-08
SB_56788| Best HMM Match : 7tm_1 (HMM E-Value=4e-32)                   31   0.86 
SB_45713| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_588| Best HMM Match : p450 (HMM E-Value=0.17)                       29   6.1  

>SB_33974| Best HMM Match : Coprogen_oxidas (HMM E-Value=0)
          Length = 539

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 29/55 (52%), Positives = 32/55 (58%)
 Frame = -1

Query: 654 WXLXXRXXICGVXFSYTTRGTKFGXHTXEARYESILMSLPLNAKWEYMHQVQPNS 490
           W L  R         Y  RGTKFG +T  +R ESILMSLPL A+WEYMH    NS
Sbjct: 469 WQLLRRGRYVEFNLVYD-RGTKFGLYTPGSRIESILMSLPLEARWEYMHVPDKNS 522


>SB_56788| Best HMM Match : 7tm_1 (HMM E-Value=4e-32)
          Length = 524

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +3

Query: 393 IILFALCIRPLFILYLKPIFXVLLGFSTVFLLQSSVGLGAYIP 521
           ++LFALC  P  +LYL   F V+   S  FLL     L  ++P
Sbjct: 397 MVLFALCYLPYQVLYLLMNFDVMATLSYGFLLFKYAHLLTWVP 439


>SB_45713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 702

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
 Frame = +3

Query: 321 SSIVYSKYVLHLLC*TSK--SILIFTIILFALCIRPLFILYLKPIFXVLLGFS-TVFLLQ 491
           SS V +  V   +  TSK  ++LI  +IL+A+C+ P  ++YL  ++  LL F   V++L+
Sbjct: 226 SSHVLAAAVRQRMKQTSKITNMLIALVILYAICMLPQHVVYLCMVYGDLLQFKYRVYVLR 285


>SB_588| Best HMM Match : p450 (HMM E-Value=0.17)
          Length = 304

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +3

Query: 354 LLC*TSKSILIFTIILFALCIRPLFILYLK 443
           L C  +  IL+  I+LFAL I  L+ILY++
Sbjct: 4   LSCVLTALILLSVILLFALLIYALYILYVR 33


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,061,881
Number of Sequences: 59808
Number of extensions: 333933
Number of successful extensions: 543
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)