Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_D01
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    27   3.0  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    26   6.8  

>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 88  MFQCYFNEGFLCSSFTSRKH 147
           M++ + NE  LC  F  RKH
Sbjct: 375 MYETFINEASLCDKFMKRKH 394


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 33  YYYNNKQKNRIHLCFXVQ 86
           Y++  +QK ++HL F +Q
Sbjct: 81  YFHRERQKEKVHLAFLIQ 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,872,319
Number of Sequences: 5004
Number of extensions: 30361
Number of successful extensions: 55
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)