Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C24
         (830 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    39   8e-04
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    29   0.61 
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   2.5  
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz...    27   4.3  
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       26   7.5  
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch...    25   10.0 

>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = -2

Query: 166 KMGLKGEADRFIGTKMPKHLFAGKRGVGKTDRR 68
           +M    E+DR +    PKHL +GKRG GKT RR
Sbjct: 610 RMARASESDRHVIAAKPKHLLSGKRGNGKTQRR 642



 Score = 35.1 bits (77), Expect = 0.012
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -1

Query: 752 DIEVELGDXYVXXXKKNYXEIPEDE--RYDVIPEIWEGHNIADYIDPDI 612
           DIE   G   V   +     I +D   +YD +PE+ +G N+AD++DP+I
Sbjct: 401 DIEAANGGAGVYNVELRDKYILQDPSWKYDRMPELLDGKNVADFVDPEI 449


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 27/91 (29%), Positives = 45/91 (49%)
 Frame = -2

Query: 625 STRTSLINWQSWRRTRNCARLAACTPRPRSSWTTP*GRXRELARQIRNKKAILKDESRLV 446
           +T+ SL+  QS   + N A ++   P  RS      G     + + +N+ A L  +S++ 
Sbjct: 97  NTQKSLVT-QSSTGSANVAYISGNGPGDRSFIDD--GNYSASSFERQNRTAPL--QSKVT 151

Query: 445 KQSTKPVMPRTSRAKTKQRSTSKLRKDMEKL 353
             S KP +PRTS + +   S + LRK   +L
Sbjct: 152 TASLKPNIPRTSMSSSPTASRTSLRKGAGEL 182


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
 Frame = -2

Query: 502 LARQIRNKKA----ILKDESRLVKQSTKPVMPRTSRAKT---KQRSTSKLRKDMEKLGVD 344
           L +  ++KKA    +  D S+     TK   P+ S+ KT   +Q + S   +  EKL  D
Sbjct: 528 LTKASKSKKAKASKLANDTSKNANGETKST-PKKSKKKTSKAQQEANSTTAEGKEKLSGD 586

Query: 343 MSETGDA 323
            +ETG++
Sbjct: 587 STETGNS 593


>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -1

Query: 218 ARESKEDGARGHRQEDQEDGPQ-GRGGPVHRHQ-DAEASVRWKTWGRQDGPEIV 63
           A E +E+     ++ED+ED  + G G  +     D EASV   T  + +  E++
Sbjct: 340 AEEEEEEEQEEEQEEDEEDEEEVGAGSDIKGFDADKEASVARATINKYEDDEVI 393


>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 45  EHCPLMHYLRSVLPTPRFPANRCFGILVPMNRSASPLRPIFLVFL 179
           +H   +HYL S        +N    +L+  N   SP+R  F++ +
Sbjct: 61  QHLKEIHYLISASAKLLLASNYLLELLISHNIQFSPIRSFFIIMV 105


>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 330 PVSDMSTPSFSMSFLSLEVDLCLVLAREVRGITGFVDCF 446
           P+   STP   +S LS ++DL    A +  G+T F D F
Sbjct: 144 PLEIYSTP---VSVLSSQIDLLRRFATDSDGLTPFTDVF 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,353,216
Number of Sequences: 5004
Number of extensions: 38927
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)