Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_C24
(830 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0668 - 4882174-4884204 53 3e-07
07_01_0075 - 558829-560859 51 1e-06
12_02_0298 + 17041206-17041712 32 0.49
07_03_0161 - 14560287-14560426,14560467-14560707 31 1.1
02_04_0461 - 23125260-23125868 30 2.0
09_06_0354 - 22490833-22491417 30 2.6
01_03_0308 - 14883728-14884120 30 2.6
01_07_0260 - 42364769-42364777,42364884-42365354 29 4.5
11_01_0404 + 3071412-3071464,3073572-3074970 29 6.0
06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991 29 6.0
>06_01_0668 - 4882174-4884204
Length = 676
Score = 52.8 bits (121), Expect = 3e-07
Identities = 52/177 (29%), Positives = 75/177 (42%), Gaps = 30/177 (16%)
Frame = -2
Query: 508 RELARQIRNKKAILKDESRLVKQS--TKPVMPR---------TSR--------------A 404
RE+ QIR KKA+L E R+ K++ ++P++PR T+R A
Sbjct: 501 REILGQIRKKKALLIQEHRMKKRTAESRPIVPRKFDKDRTFTTNRMGRQLSSMGFDPRAA 560
Query: 403 KTKQRSTSKLRKDMEKLGVDMSETGDAHFTXXXXXXXXXXXXXXXXXXXREPSNQPVA-- 230
+ RS S+ RK L S+ D P + V
Sbjct: 561 LDRARSRSRGRKRERSLSRAASDGDDMDIDGQQSSKKLRALSRSRSRSKSRPPEEVVPGE 620
Query: 229 ---DPIMRVKVKRMAHAAIAKKTKKMGLKGEADRFIGTKMPKHLFAGKRGVGKTDRR 68
D + K + A ++ + K+ +GEADR I T PKHLF+GKR +GKT RR
Sbjct: 621 GFKDSAQKKKAIKKAKDSVRNRNKE-ARRGEADRVIPTLKPKHLFSGKRSIGKTSRR 676
Score = 47.2 bits (107), Expect = 2e-05
Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Frame = -1
Query: 755 EDIEVELGDX--YVXXXKKNYXEIPEDERYDVIPEIWEGHNIADYIDPDI 612
+D+E E G Y KK+Y ++ + D++PEI +GHN+AD++DPDI
Sbjct: 416 KDLENENGGAGVYSASLKKHYLLADDEWKEDILPEILDGHNVADFLDPDI 465
>07_01_0075 - 558829-560859
Length = 676
Score = 50.8 bits (116), Expect = 1e-06
Identities = 50/177 (28%), Positives = 72/177 (40%), Gaps = 30/177 (16%)
Frame = -2
Query: 508 RELARQIRNKKAILKDESRLVKQS--TKPVMPRT-----------------------SRA 404
RE+ QIR KKA+L E R+ K++ ++P++PR S A
Sbjct: 501 REILGQIRKKKALLIQEHRMKKRTAESRPIVPRKFDKDRTFTTDRMGRQLSSMGFDPSAA 560
Query: 403 KTKQRSTSKLRKDMEKLGVDMSETGDAHFTXXXXXXXXXXXXXXXXXXXREPSNQPVA-- 230
+ RS S+ RK L S+ D P + V
Sbjct: 561 MDRARSRSRGRKRERSLSRAASDGDDMDIDGQQSSKKLRALSRSRSRSKSRPPEEVVPGE 620
Query: 229 ---DPIMRVKVKRMAHAAIAKKTKKMGLKGEADRFIGTKMPKHLFAGKRGVGKTDRR 68
D + K + A ++ + K+ +GEADR I T PKHLF+GK +GKT RR
Sbjct: 621 GFKDSAQKKKAIKKAKDSVRNRNKE-ARRGEADRVIPTLKPKHLFSGKSSIGKTSRR 676
Score = 47.2 bits (107), Expect = 2e-05
Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Frame = -1
Query: 755 EDIEVELGDX--YVXXXKKNYXEIPEDERYDVIPEIWEGHNIADYIDPDI 612
+D+E E G Y KK+Y ++ + D++PEI +GHN+AD++DPDI
Sbjct: 416 KDLENENGGAGVYSASLKKHYLLADDEWKEDILPEILDGHNVADFLDPDI 465
>12_02_0298 + 17041206-17041712
Length = 168
Score = 32.3 bits (70), Expect = 0.49
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 601 WQSWRRTRNCARLAACTPRPRS 536
W SW +NCA AA +P PRS
Sbjct: 42 WSSWPSAKNCATTAAPSPAPRS 63
>07_03_0161 - 14560287-14560426,14560467-14560707
Length = 126
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +1
Query: 412 RCAASPASWT-ASPGETRP*E-WPSCCVSAG 498
RC A W A+PG T P WP CC +AG
Sbjct: 7 RCPALAVQWNRAAPGATVPPAGWPRCCGAAG 37
>02_04_0461 - 23125260-23125868
Length = 202
Score = 30.3 bits (65), Expect = 2.0
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Frame = -2
Query: 655 FGRDTTSPTISTRTSLINWQSWRRTRNCARLAACTPRPRSSWTTP*GRXRELARQIRNKK 476
FG+ T I+ R S W+ R R A A+ P P R + L R + +
Sbjct: 64 FGQPTYDGVIAGRVSGRRWKEARTRRASALAASRKPTPLEQR----ARDKSLKRAYQARV 119
Query: 475 AILKDESRLVKQSTKPVMPRTSRAKTKQ--RSTSKLRK 368
A LK+E R K + + + K + RS +KL++
Sbjct: 120 AELKEEIRQSKAAKRKQREEREKRKKENVLRSGTKLQR 157
>09_06_0354 - 22490833-22491417
Length = 194
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -2
Query: 496 RQIRNKKAILKDESRLVKQSTKPVMPRTSRAKTKQRSTSKLRKDMEKLGVDMSET 332
++ NKK K+ + LVK TK V T+ A+ + T ++ D K G ET
Sbjct: 6 KEAANKKKKKKEVAVLVKTKTKVVQLTTTTAELELEPTVTVQVDDNKTGAAADET 60
>01_03_0308 - 14883728-14884120
Length = 130
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -2
Query: 592 WRRTRNCARLAACTPRPRSS-WTTP*GRXRELARQIRNKKAILKDES 455
WRR R C+ ++C P R W + RE+ R I +K ++ DE+
Sbjct: 85 WRRHRRCSCNSSCPPIEREERWRKDKRKKREMLR-IDEEKRLILDET 130
>01_07_0260 - 42364769-42364777,42364884-42365354
Length = 159
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -1
Query: 239 AGGRPHHARESKEDGARGHRQEDQEDGPQGRGGPVH 132
A R H E + A GH ++ G GRG VH
Sbjct: 15 AAMRQGHGEEDRSKDATGHGEDQDGGGAAGRGEEVH 50
>11_01_0404 + 3071412-3071464,3073572-3074970
Length = 483
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1
Query: 224 HHARESKEDGARGHRQEDQEDGPQGRGGPVHRHQDAEASVR 102
HH++ D ED DG +G P HR + ++ V+
Sbjct: 129 HHSKNHGSDEEEHDMNEDAADGKDKKGSPWHRMKWTDSMVK 169
>06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991
Length = 276
Score = 28.7 bits (61), Expect = 6.0
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Frame = -1
Query: 254 GTLQPAGGRPHHARESKEDGARGHRQEDQEDGPQGRGGPVHR---HQDAEASVRWKTWGR 84
G P+ HA + R H Q+ P H Q A A ++ W
Sbjct: 150 GRRAPSPSPQMHAASRRHHHGR-HHQQVAPKARSASASPQHNIYGRQRASAVPKFGVWDE 208
Query: 83 QDGPEIVHQWTVLFTNI 33
Q+G +TV+F N+
Sbjct: 209 QNGEAAAQGFTVMFDNV 225
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,706,483
Number of Sequences: 37544
Number of extensions: 337526
Number of successful extensions: 1413
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1411
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -