Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C24
         (830 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036706-10|AAM97948.1|  633|Caenorhabditis elegans Hypothetical...    68   1e-11
AF036706-9|AAK39281.1|  681|Caenorhabditis elegans Hypothetical ...    68   1e-11
AF036706-11|AAO91698.1|   53|Caenorhabditis elegans Hypothetical...    37   0.015
Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical p...    31   1.0  
Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U39851-8|AAF99879.1|  937|Caenorhabditis elegans Hypothetical pr...    30   2.3  
AC091124-1|AAK27878.1|  255|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical pr...    29   5.4  
L23651-12|AAA27958.1|  305|Caenorhabditis elegans Collagen prote...    29   5.4  
U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily ass...    28   7.1  
U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily ass...    28   7.1  
Z49938-3|CAA90188.1|  306|Caenorhabditis elegans Hypothetical pr...    28   9.4  
Z49069-2|CAA88865.1|  333|Caenorhabditis elegans Hypothetical pr...    28   9.4  

>AF036706-10|AAM97948.1|  633|Caenorhabditis elegans Hypothetical
           protein T07A9.9b protein.
          Length = 633

 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 25/47 (53%), Positives = 37/47 (78%)
 Frame = -1

Query: 752 DIEVELGDXYVXXXKKNYXEIPEDERYDVIPEIWEGHNIADYIDPDI 612
           +IE+E+ D Y+   KK+Y     DE+YD++PEIWEGHN+AD++DP+I
Sbjct: 449 EIELEMQDDYILDLKKHYMLKNPDEKYDIVPEIWEGHNLADFVDPEI 495



 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 24/49 (48%), Positives = 29/49 (59%)
 Frame = -2

Query: 214 VKVKRMAHAAIAKKTKKMGLKGEADRFIGTKMPKHLFAGKRGVGKTDRR 68
           V  K+M +        ++G KGEADR +    PKHLF GKRG GKTD R
Sbjct: 585 VDTKKMKNLQGQCAKPQLGKKGEADRHVYDLKPKHLFCGKRGNGKTDWR 633


>AF036706-9|AAK39281.1|  681|Caenorhabditis elegans Hypothetical
           protein T07A9.9a protein.
          Length = 681

 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 25/47 (53%), Positives = 37/47 (78%)
 Frame = -1

Query: 752 DIEVELGDXYVXXXKKNYXEIPEDERYDVIPEIWEGHNIADYIDPDI 612
           +IE+E+ D Y+   KK+Y     DE+YD++PEIWEGHN+AD++DP+I
Sbjct: 449 EIELEMQDDYILDLKKHYMLKNPDEKYDIVPEIWEGHNLADFVDPEI 495



 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 42/151 (27%), Positives = 63/151 (41%), Gaps = 5/151 (3%)
 Frame = -2

Query: 505 ELARQIRNKKAILKDESRLVKQSTKPVMPRTSRAKTKQRSTSKLRKDMEKLGVDMSETGD 326
           +LA QIR K+ +L  +  + K+    +  R   ++ + RS S+L  ++ +LGVD+     
Sbjct: 531 KLALQIREKEKLLTLDHAVNKRIAGRIGSRIHGSRKRDRSMSRLENELGELGVDVDTKKM 590

Query: 325 AHFTXXXXXXXXXXXXXXXXXXXREPSNQPVADPIMRVKVKRMAHAAIAKKTKKMGL--- 155
            +                              D +     ++ AH    +     GL   
Sbjct: 591 KNLQGQCAKPQLGKKMKVGRSRSLSAVRPAPRDELAFPDEEKRAHVDKLRTKAMRGLRRE 650

Query: 154 --KGEADRFIGTKMPKHLFAGKRGVGKTDRR 68
             KGEADR +    PKHLF GKRG GKTD R
Sbjct: 651 AKKGEADRHVYDLKPKHLFCGKRGNGKTDWR 681


>AF036706-11|AAO91698.1|   53|Caenorhabditis elegans Hypothetical
           protein T07A9.9c protein.
          Length = 53

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 25/55 (45%), Positives = 31/55 (56%)
 Frame = -2

Query: 232 ADPIMRVKVKRMAHAAIAKKTKKMGLKGEADRFIGTKMPKHLFAGKRGVGKTDRR 68
           AD + R K+  +  AA+ +  K   LK +   F   K PKHLF GKRG GKTD R
Sbjct: 4   ADSLYRCKM--LKRAALGRMVKL--LKRQKSSFEYLK-PKHLFCGKRGNGKTDWR 53


>Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical
           protein C34E11.3 protein.
          Length = 1577

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = -2

Query: 514 RXRELARQIRNKKAILKDESRLVKQSTKPVMPRTSRAKTKQRSTSKLRKDMEKLGVD 344
           R  +  RQ      +L+ +S  + + T+ +  +  R+K  +  T  LRKDM++L  D
Sbjct: 748 RVADAKRQNDELSELLESKSTTLVEKTRSLEEQEERSKKLRAETELLRKDMQELETD 804


>Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical
           protein C34E11.3 protein.
          Length = 1577

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = -2

Query: 514 RXRELARQIRNKKAILKDESRLVKQSTKPVMPRTSRAKTKQRSTSKLRKDMEKLGVD 344
           R  +  RQ      +L+ +S  + + T+ +  +  R+K  +  T  LRKDM++L  D
Sbjct: 748 RVADAKRQNDELSELLESKSTTLVEKTRSLEEQEERSKKLRAETELLRKDMQELETD 804


>Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical
           protein C34E11.3 protein.
          Length = 1577

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = -2

Query: 514 RXRELARQIRNKKAILKDESRLVKQSTKPVMPRTSRAKTKQRSTSKLRKDMEKLGVD 344
           R  +  RQ      +L+ +S  + + T+ +  +  R+K  +  T  LRKDM++L  D
Sbjct: 748 RVADAKRQNDELSELLESKSTTLVEKTRSLEEQEERSKKLRAETELLRKDMQELETD 804


>U39851-8|AAF99879.1|  937|Caenorhabditis elegans Hypothetical
           protein C23G10.8 protein.
          Length = 937

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = +3

Query: 69  LRSVLPTPRFPANRCFGILVPMNRSASPLRPIFLVFL-----AMAACAILFTFTRMM 224
           L S  PT  F  +  F IL P N +A  + P+FL+       AMA C  + T  RM+
Sbjct: 637 LGSNSPTENFMTSEYFDILQPWNYTALWINPLFLLAKDGNQEAMAQCTRIKTAPRMV 693


>AC091124-1|AAK27878.1|  255|Caenorhabditis elegans Hypothetical
           protein Y47A7.2 protein.
          Length = 255

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
 Frame = -2

Query: 604 NWQSWRRTRNCARLAACTPRPRSSWTTP*GRXRELARQIRNKKAILKDESRLVKQSTKPV 425
           N ++ R    CARLA C P  R           E   ++  KK +LK+ ++    + K  
Sbjct: 143 NKEARRLKSQCARLAKCCPAVRVC------HRNEDKTELEEKKKLLKEATKDCATNGKKG 196

Query: 424 MPRTSR--AKTKQRSTSKLRKDMEKLG 350
           + +T +   + ++R   K + D +K G
Sbjct: 197 VKKTGKRVGEDREREGKKAKGDNKKTG 223


>Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical
           protein F17C8.2 protein.
          Length = 296

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -1

Query: 254 GTLQPAG--GRPHHARESKEDGARGHRQEDQEDGPQGRGGP 138
           G   PAG  G+P    ++ +DG  G    D + GP G  GP
Sbjct: 159 GPAGPAGSDGQPGAPGDAGKDGPPGPPGPDGDSGPNGEAGP 199


>L23651-12|AAA27958.1|  305|Caenorhabditis elegans Collagen protein
           90 protein.
          Length = 305

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 254 GTLQPAG--GRPHHARESKEDGARGHRQEDQEDGPQGRGGPVH 132
           GT  P+G  G+P  A    + GA+G +  D  DGP G  G  +
Sbjct: 163 GTCGPSGDDGQPGPAGPLGDKGAQGPKGFDGADGPDGMPGTAY 205


>U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 279, isoform a protein.
          Length = 1020

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 445 KQSTKPVMPRTSRAKTKQRSTSKLRKDMEKLGVDMSETG 329
           + +T+P +PRT RA TK  +T + R+  +    D  + G
Sbjct: 332 QSATEPPIPRTKRAYTKNPNTIRKRRMKKNQSDDEEDDG 370


>U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 279, isoform b protein.
          Length = 1061

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 445 KQSTKPVMPRTSRAKTKQRSTSKLRKDMEKLGVDMSETG 329
           + +T+P +PRT RA TK  +T + R+  +    D  + G
Sbjct: 373 QSATEPPIPRTKRAYTKNPNTIRKRRMKKNQSDDEEDDG 411


>Z49938-3|CAA90188.1|  306|Caenorhabditis elegans Hypothetical
           protein F38A3.2 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -1

Query: 242 PAG--GRPHHARESKEDGARGHRQEDQEDGPQGRGG 141
           PAG  G P  A     DGA G   +  +DGPQG  G
Sbjct: 230 PAGPAGAPGPAGAPGADGAAGAPGQPGQDGPQGPAG 265


>Z49069-2|CAA88865.1|  333|Caenorhabditis elegans Hypothetical
           protein K12D12.3 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 19/44 (43%), Positives = 22/44 (50%)
 Frame = -1

Query: 200 DGARGHRQEDQEDGPQGRGGPVHRHQDAEASVRWKTWGRQDGPE 69
           DG  GH  E    GPQG+ GP  R  +  A  R K  GR  GP+
Sbjct: 204 DGNPGHPGEMGAPGPQGKQGPDGRQGEKGADGR-KPIGR-PGPK 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,671,278
Number of Sequences: 27780
Number of extensions: 246607
Number of successful extensions: 1122
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)