Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C24
         (830 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50920.1 68414.m05725 GTP-binding protein-related similar to ...    54   9e-08
At1g10300.1 68414.m01160 GTP-binding protein-related contains si...    50   3e-06
At3g01085.1 68416.m00012 protein kinase family protein contains ...    31   0.71 
At5g63640.1 68418.m07990 VHS domain-containing protein / GAT dom...    29   2.9  
At2g37930.1 68415.m04656 expressed protein                             29   5.0  
At3g53780.2 68416.m05942 rhomboid family protein contains PFAM d...    28   6.6  
At3g53780.1 68416.m05941 rhomboid family protein contains PFAM d...    28   6.6  
At5g46220.1 68418.m05688 expressed protein contains Pfam profile...    28   8.7  
At3g51290.1 68416.m05614 proline-rich family protein                   28   8.7  

>At1g50920.1 68414.m05725 GTP-binding protein-related similar to
           GTP-binding protein SP:Q99ME9 from [Mus musculus]
          Length = 671

 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 27/49 (55%), Positives = 32/49 (65%)
 Frame = -2

Query: 214 VKVKRMAHAAIAKKTKKMGLKGEADRFIGTKMPKHLFAGKRGVGKTDRR 68
           +K+   +H    KK  K   +GEADR I T  PKHLF+GKRG GKTDRR
Sbjct: 627 IKISNKSH----KKRDKNARRGEADRVIPTLRPKHLFSGKRGKGKTDRR 671



 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
 Frame = -1

Query: 755 EDIEVELGDX--YVXXXKKNYXEIPEDERYDVIPEIWEGHNIADYIDPDI 612
           +D+E E G    Y    KKNY    ++ + D++PEI +GHN+AD+IDPDI
Sbjct: 409 KDLEEENGGAGVYSASLKKNYILQHDEWKEDIMPEILDGHNVADFIDPDI 458


>At1g10300.1 68414.m01160 GTP-binding protein-related contains
           similarity to nucleolar GTP-binding protein 1 SP: Q9BZE4
           from [Homo sapiens];
          Length = 687

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 24/54 (44%), Positives = 33/54 (61%)
 Frame = -2

Query: 229 DPIMRVKVKRMAHAAIAKKTKKMGLKGEADRFIGTKMPKHLFAGKRGVGKTDRR 68
           D   ++K  ++ H +  +K  K   +GEADR I +  PKHLF+GKRG GK  RR
Sbjct: 635 DSSQKIKAIKIGHKS-HRKRDKAARRGEADRVIPSLKPKHLFSGKRGNGKNQRR 687



 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
 Frame = -1

Query: 776 RDXKGXXEDIEVELGDX--YVXXXKKNYXEIPEDERYDVIPEIWEGHNIADYIDPDI 612
           ++ +   +D+E E G    Y    KKNY    E+ + D+IPEI + HN+AD++D DI
Sbjct: 416 KEKRKTEKDLEDENGGAGVYSASLKKNYILAKEEWKDDIIPEICDCHNVADFVDSDI 472



 Score = 31.9 bits (69), Expect = 0.54
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
 Frame = -2

Query: 490 IRNKKAILKDESRLVKQS--TKPVMPRTSRAKTKQRSTSKLRKDMEKLGVDMS 338
           IR KKA+L +ESRL K +   +  +PR    K K+ +  ++ +++  LG+D S
Sbjct: 513 IRKKKALLIEESRLKKSNAQNRAAVPR-KFDKDKKFTRKRMGRELSSLGLDPS 564


>At3g01085.1 68416.m00012 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain; contains
           non-consensus splice site (GC) at intron 2
          Length = 629

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
 Frame = -1

Query: 233 GRPHHARESKEDGARGHRQEDQEDGPQGR-------GGPVHRHQDAE-ASVRWKTWGRQD 78
           G P H R       + HR  D +D P+ R        G  H + +AE  +  W +W    
Sbjct: 42  GPPSH-RRVVNSSPKKHRNND-DDAPKSRTTGVSLRSGLPHSNVEAEQVAAGWPSWLSSA 99

Query: 77  GPEIVHQWTVL 45
            PE VH W  L
Sbjct: 100 APEAVHGWVPL 110


>At5g63640.1 68418.m07990 VHS domain-containing protein / GAT
           domain-containing protein weak similarity to hepatocyte
           growth factor-regulated tyrosine kinase substrate HRS
           isoform 2 [Homo sapiens] GI:9022389; contains Pfam
           profiles PF00790: VHS domain, PF03127: GAT domain
          Length = 447

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = -1

Query: 551 AAPKIELDDTVREXQGTGPADTQQEGHSQGRVSPGEAVHEAGDAAHLASQDQAEVHLQAQ 372
           A P+  L++ +   +  GPA TQQ   SQ  VSP   + +A  A  +  +    V  Q  
Sbjct: 152 AVPRNTLNEQLASARNEGPATTQQR-ESQS-VSPSSILQKASTALEILKEVLDAVDSQNP 209

Query: 371 EG 366
           EG
Sbjct: 210 EG 211


>At2g37930.1 68415.m04656 expressed protein
          Length = 467

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = -2

Query: 232 ADPIMRVKVK-RMAHAAIAKKTKKMGLKGEADRFIGTKMPKHLFAGKRGVGKTDRR*CIS 56
           AD +MRV  K +  H  ++ K K++    E    I     K      R V   DRR  + 
Sbjct: 19  ADTVMRVDQKGKREHQLLSMKQKELSHASELSSCISPGSEKF-----RTVECQDRRHDVE 73

Query: 55  GQCSLPIYI 29
           G+CS P+ +
Sbjct: 74  GECSSPVSV 82


>At3g53780.2 68416.m05942 rhomboid family protein contains PFAM
           domain PF01694, Rhomboid family
          Length = 394

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 39  GKEHCPLMHYLRSVLPTPRFPANR 110
           G EHC   HYL S +PT ++  NR
Sbjct: 326 GNEHCSWCHYL-SCVPTSKWSCNR 348


>At3g53780.1 68416.m05941 rhomboid family protein contains PFAM
           domain PF01694, Rhomboid family
          Length = 270

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 39  GKEHCPLMHYLRSVLPTPRFPANR 110
           G EHC   HYL S +PT ++  NR
Sbjct: 202 GNEHCSWCHYL-SCVPTSKWSCNR 224


>At5g46220.1 68418.m05688 expressed protein contains Pfam profile
           PF04765: Protein of unknown function (DUF616)
          Length = 465

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 137 VHRHQDAEASVRWKTWGRQDGPEI 66
           V+  ++A A+ RWK WG  DG  I
Sbjct: 299 VNTMEEAMATARWKKWGDVDGLRI 322


>At3g51290.1 68416.m05614 proline-rich family protein 
          Length = 602

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/62 (27%), Positives = 33/62 (53%)
 Frame = -2

Query: 508 RELARQIRNKKAILKDESRLVKQSTKPVMPRTSRAKTKQRSTSKLRKDMEKLGVDMSETG 329
           ++L ++++  ++I  D  + V+Q  +  M R    KT+     K +KD+EKL   +S + 
Sbjct: 301 KKLYQEVKYAESIKMDHEKKVEQVRRLEMKRAEYVKTE-----KAKKDVEKLESQLSVSS 355

Query: 328 DA 323
            A
Sbjct: 356 QA 357


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,118,363
Number of Sequences: 28952
Number of extensions: 233791
Number of successful extensions: 803
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)