Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_C23
(824 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 210 1e-54
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 109 2e-24
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 103 1e-22
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 71 1e-12
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 71 1e-12
Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical pr... 61 8e-10
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 61 8e-10
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 59 3e-09
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 59 3e-09
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 58 8e-09
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 58 8e-09
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 58 8e-09
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 52 7e-07
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 50 3e-06
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 43 3e-04
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 41 0.001
U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2 (c... 40 0.002
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 39 0.004
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 38 0.012
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 36 0.027
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 35 0.081
AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin con... 30 1.7
U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin conju... 29 5.3
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 28 9.3
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 28 9.3
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 28 9.3
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 28 9.3
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 28 9.3
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 28 9.3
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 210 bits (512), Expect = 1e-54
Identities = 92/129 (71%), Positives = 109/129 (84%)
Frame = -3
Query: 699 PLTTPYSPPSIRFLTKVWHPNVYENGDLCISILHPPVDDPQSGELPCERWNPTQSVRTVL 520
P PYSPPS++F TKVWHPNVYENGDLCISILH P+DDPQSGEL CERWNPTQSVRT+L
Sbjct: 66 PSNYPYSPPSMKFTTKVWHPNVYENGDLCISILHSPIDDPQSGELACERWNPTQSVRTIL 125
Query: 519 LSVISLLNEPNTFSPANVDASVMYRRWRDSKGKDKEYENIIRKQAQVARMEAEKEGIVVP 340
LSVISLLNEPNT SPANVDASVMYR+W++ +D EY I+ KQ + ++ A+K+GI VP
Sbjct: 126 LSVISLLNEPNTSSPANVDASVMYRKWKED--QDPEYAKIVTKQVEESKKVAQKDGIQVP 183
Query: 339 LTLEDYCIK 313
T+E+YC+K
Sbjct: 184 ETIEEYCVK 192
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 109 bits (262), Expect = 2e-24
Identities = 51/104 (49%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Frame = -3
Query: 699 PLTTPYSPPSIRFLTKVWHPNVYENGDLCISILHPPVDDPQSGELPCERWNPTQSVRTVL 520
P P SPP +RF ++HPN+Y +G +CISILH P DDP EL ERW+P QS+ +L
Sbjct: 61 PQDYPLSPPKMRFTCGIFHPNIYADGRVCISILHAPGDDPTGYELSNERWSPVQSIEKIL 120
Query: 519 LSVISLLNEPNTFSPANVDASVMYRRWRDSKGK-DKEYENIIRK 391
LSV+S+L EPN SPANV A+ M WR+ + + +K ++++RK
Sbjct: 121 LSVVSMLAEPNDESPANVSAAKM---WREDRAQFEKIADSLVRK 161
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 103 bits (248), Expect = 1e-22
Identities = 45/85 (52%), Positives = 60/85 (70%)
Frame = -3
Query: 699 PLTTPYSPPSIRFLTKVWHPNVYENGDLCISILHPPVDDPQSGELPCERWNPTQSVRTVL 520
P P PP ++F++++WHPN+ + G++CISILH P DD E P ERW P +V T+L
Sbjct: 60 PRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETIL 119
Query: 519 LSVISLLNEPNTFSPANVDASVMYR 445
LSVIS+L +PN SPANVDA+ M R
Sbjct: 120 LSVISMLTDPNFESPANVDAAKMQR 144
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 70.5 bits (165), Expect = 1e-12
Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Frame = -3
Query: 687 PYSPPSIRFLTKVWHPNVYENGDLCISILHPPVDDPQSGELPCERWNPTQSVRTVLLSVI 508
P PP+++F++K++HPNVY +G +C+ IL RW+PT V +L S+
Sbjct: 64 PNKPPTVKFISKMFHPNVYADGSICLDILQ-------------NRWSPTYDVAAILTSIQ 110
Query: 507 SLLNEPNTFSPANVDASVMYRRWRDSKGKDKEYENIIRKQAQVARME-AEKEGIVV 343
SLL+EPN SPAN A+ +Y+ R +EYE +++ + + + E EG V
Sbjct: 111 SLLDEPNPNSPANSLAAQLYQENR------REYEKRVQQIVEQSWLNFGENEGDAV 160
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 70.5 bits (165), Expect = 1e-12
Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Frame = -3
Query: 687 PYSPPSIRFLTKVWHPNVYENGDLCISILHPPVDDPQSGELPCERWNPTQSVRTVLLSVI 508
P PP+++F++K++HPNVY +G +C+ IL RW+PT V +L S+
Sbjct: 64 PNKPPTVKFISKMFHPNVYADGSICLDILQ-------------NRWSPTYDVAAILTSIQ 110
Query: 507 SLLNEPNTFSPANVDASVMYRRWRDSKGKDKEYENIIRKQAQVARME-AEKEGIVV 343
SLL+EPN SPAN A+ +Y+ R +EYE +++ + + + E EG V
Sbjct: 111 SLLDEPNPNSPANSLAAQLYQENR------REYEKRVQQIVEQSWLNFGENEGDAV 160
>Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical
protein R09B3.4 protein.
Length = 180
Score = 61.3 bits (142), Expect = 8e-10
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Frame = -3
Query: 678 PPSIRFLTKVWHPNVYENGDLCISILHPPVDDPQSGELPCERWNPTQSVRTVLLSVISLL 499
PP ++ LTKVWHPN+ E+G +C+SIL + L W PT+++ V+ ++SL
Sbjct: 91 PPVVKCLTKVWHPNINEDGSICLSIL-------RQNSLDQYGWRPTRNLTDVVHGLVSLF 143
Query: 498 NEPNTFSPA-NVDASVMYRRWRDS 430
N+ F+ A N+ A+ M+ + R+S
Sbjct: 144 NDLMDFNDALNIQAAQMWSQNRES 167
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 61.3 bits (142), Expect = 8e-10
Identities = 33/106 (31%), Positives = 51/106 (48%)
Frame = -3
Query: 699 PLTTPYSPPSIRFLTKVWHPNVYENGDLCISILHPPVDDPQSGELPCERWNPTQSVRTVL 520
P+ P+ PP + F TK++HPNV E G C+ I + E W P V+
Sbjct: 58 PVDYPFKPPKVAFETKIYHPNVDEEGKFCLPI------------VTAENWKPATKTEQVM 105
Query: 519 LSVISLLNEPNTFSPANVDASVMYRRWRDSKGKDKEYENIIRKQAQ 382
++++SL+NEP P D + ++ +D K K E RK A+
Sbjct: 106 MALLSLINEPEPSHPIRADVAEEFQ--KDHKKFMKTAEEHTRKHAE 149
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/93 (31%), Positives = 49/93 (52%)
Frame = -3
Query: 711 T*NXPLTTPYSPPSIRFLTKVWHPNVYENGDLCISILHPPVDDPQSGELPCERWNPTQSV 532
T + P P+ PP + F T+++HPN+ NG +C+ IL +W+P ++
Sbjct: 53 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTI 99
Query: 531 RTVLLSVISLLNEPNTFSPANVDASVMYRRWRD 433
VLLS+ SLL +PN P + + +Y+ R+
Sbjct: 100 SKVLLSICSLLCDPNPDDPLVPEIARIYKTDRE 132
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/93 (31%), Positives = 49/93 (52%)
Frame = -3
Query: 711 T*NXPLTTPYSPPSIRFLTKVWHPNVYENGDLCISILHPPVDDPQSGELPCERWNPTQSV 532
T + P P+ PP + F T+++HPN+ NG +C+ IL +W+P ++
Sbjct: 53 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTI 99
Query: 531 RTVLLSVISLLNEPNTFSPANVDASVMYRRWRD 433
VLLS+ SLL +PN P + + +Y+ R+
Sbjct: 100 SKVLLSICSLLCDPNPDDPLVPEIARIYKTDRE 132
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 58.0 bits (134), Expect = 8e-09
Identities = 33/101 (32%), Positives = 53/101 (52%)
Frame = -3
Query: 687 PYSPPSIRFLTKVWHPNVYENGDLCISILHPPVDDPQSGELPCERWNPTQSVRTVLLSVI 508
P +PP +F ++HPNVY +G +C+S+L D W P+ S++ +L+ +
Sbjct: 69 PSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKD-----------WKPSISIKQLLIGIQ 117
Query: 507 SLLNEPNTFSPANVDASVMYRRWRDSKGKDKEYENIIRKQA 385
LLN PN PA +A +Y + R EYE ++K+A
Sbjct: 118 DLLNHPNIEDPAQAEAYQIYCQNR------AEYEKRVKKEA 152
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 58.0 bits (134), Expect = 8e-09
Identities = 33/101 (32%), Positives = 53/101 (52%)
Frame = -3
Query: 687 PYSPPSIRFLTKVWHPNVYENGDLCISILHPPVDDPQSGELPCERWNPTQSVRTVLLSVI 508
P +PP +F ++HPNVY +G +C+S+L D W P+ S++ +L+ +
Sbjct: 69 PSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKD-----------WKPSISIKQLLIGIQ 117
Query: 507 SLLNEPNTFSPANVDASVMYRRWRDSKGKDKEYENIIRKQA 385
LLN PN PA +A +Y + R EYE ++K+A
Sbjct: 118 DLLNHPNIEDPAQAEAYQIYCQNR------AEYEKRVKKEA 152
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 58.0 bits (134), Expect = 8e-09
Identities = 28/85 (32%), Positives = 47/85 (55%)
Frame = -3
Query: 699 PLTTPYSPPSIRFLTKVWHPNVYENGDLCISILHPPVDDPQSGELPCERWNPTQSVRTVL 520
P P + P +RF+TK++HPN+ + G +C+ IL ++W+P +RTVL
Sbjct: 60 PEEYPMAAPKVRFMTKIYHPNIDKLGRICLDILK-------------DKWSPALQIRTVL 106
Query: 519 LSVISLLNEPNTFSPANVDASVMYR 445
LS+ +LL+ PN P D + ++
Sbjct: 107 LSIQALLSAPNPEDPLATDVAEQWK 131
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 51.6 bits (118), Expect = 7e-07
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = -3
Query: 687 PYSPPSIRFLTKVWHPNV-YENGDLCISILHPPVDDPQSGELPCERWNPTQSVRTVLLSV 511
P+SPP+++F TK+WHPNV + G +C+ IL ++W + ++RTVLLS+
Sbjct: 67 PFSPPNVKFSTKIWHPNVSSQTGVICLDILK-------------DQWAASLTLRTVLLSI 113
Query: 510 ISLLNEPNTFSPANVDASVMY 448
+L+ P P + + Y
Sbjct: 114 QALMCTPEPKDPQDAVVAKQY 134
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 49.6 bits (113), Expect = 3e-06
Identities = 29/80 (36%), Positives = 41/80 (51%)
Frame = -3
Query: 687 PYSPPSIRFLTKVWHPNVYENGDLCISILHPPVDDPQSGELPCERWNPTQSVRTVLLSVI 508
P+ PP ++F V+HPNV P + S L E W P ++ VLL++I
Sbjct: 73 PFKPPYLKFCHNVYHPNV-----------DPVTCELCSPMLLQENWKPETTMEDVLLNLI 121
Query: 507 SLLNEPNTFSPANVDASVMY 448
LLNEP+ P N+DA+ Y
Sbjct: 122 VLLNEPDLSRPVNIDAAHDY 141
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = -3
Query: 699 PLTTPYSPPSIRFLTKV-----WHPNVYENGDLCISILHPPVDDPQSGELPCERWNPTQS 535
P P+SPP FLT ++PN+Y +G +C+SIL P+ E+WNP S
Sbjct: 469 PTGYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSILGTWEGRPE------EKWNPYCS 522
Query: 534 VRTVLLSVISLLNE 493
+ VL+S+ ++ +
Sbjct: 523 LMQVLVSIQEVIEK 536
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 41.1 bits (92), Expect = 0.001
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = -3
Query: 687 PYSPPSIRFL--TKVWHPNVYENGDLCISILHPPVDDPQSGELPCERWNPTQSVRTVLLS 514
P++ P + F+ T HP++Y NG +C+SIL DD W P SV++V LS
Sbjct: 66 PFNSPEVMFVGETIPAHPHIYSNGHICLSILS---DD----------WTPALSVQSVCLS 112
Query: 513 VISLLN 496
++S+L+
Sbjct: 113 ILSMLS 118
>U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2
(conjugating enzyme)variant protein 2 protein.
Length = 230
Score = 39.9 bits (89), Expect = 0.002
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Frame = -3
Query: 687 PYSPPSIRFLTKVWHPNVYENGDLCISILHPPVDDPQSGELPCERWNPTQSVRTVLLSVI 508
P PP F T + HPNV G + + +L E W+ S++ +L +
Sbjct: 98 PIIPPICEFKTPLHHPNVDLRGSIYLKMLEQ------------EHWSSETSLKKLLREIS 145
Query: 507 SLLNEPNTFSPANVDASVMYRRWRDS-KGKDKEYENIIRKQAQVARME-AEKEGI 349
+LL P+ AN++A + Y R++ + K + Y + A V ME +E GI
Sbjct: 146 NLLATPDLTQAANIEAWMEYENQRENYEAKARAYAWTVNPNA-VGYMEVSENSGI 199
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 39.1 bits (87), Expect = 0.004
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = -3
Query: 666 RFLTKVWHPNV-YENGDLCISILHPPVDDPQSGELPCERWNPTQSVRTVLLSVISLLNEP 490
+F+T++WHPN+ + G +C+ IL ++W + ++RTVLLS+ ++L P
Sbjct: 103 KFVTRIWHPNISSQTGTICLDILK-------------DKWTASLTLRTVLLSLQAMLCSP 149
Query: 489 NTFSP 475
P
Sbjct: 150 EPSDP 154
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 37.5 bits (83), Expect = 0.012
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = -3
Query: 687 PYSPPSIRFLTKVWHPNVYE-NGDLCISILHPPVDDPQSGELPCERWNPTQSVRTVLLSV 511
P+ PSI FL K++HPN+ E +G +C+ +++ + W + + +
Sbjct: 63 PFKSPSIGFLNKIFHPNIDEASGTVCLDVIN-------------QAWTALYDLTNIFDTF 109
Query: 510 I-SLLNEPNTFSPANVDASVMY 448
+ LL PN P N +A+ +Y
Sbjct: 110 LPQLLTYPNAADPLNGEAARLY 131
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 36.3 bits (80), Expect = 0.027
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = -3
Query: 687 PYSPPSIRFLTKVWHPNVYE-NGDLCISILHPPVDDPQSGELPCERWNPTQSVRTVLLSV 511
P+ P+++F+TK+WHP+V +G +C LH D +G W + ++ VL+ +
Sbjct: 409 PFKAPTVKFITKIWHPSVSPFDGTIC---LH----DVDNGV-----WPVSMTIYKVLIVI 456
Query: 510 ISLLNEPNTFSPANVD 463
S ++ N P +V+
Sbjct: 457 QSWMSNFNEKEPIDVE 472
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 34.7 bits (76), Expect = 0.081
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 6/120 (5%)
Frame = -3
Query: 699 PLTTPYSPPSIRFLTKVWHPNVYENGDLCISI--LHPPVDDPQSGELPCERWNPTQSVRT 526
P P+ PP+I LT + N LC+SI HP + WNP +V T
Sbjct: 64 PKDFPFKPPAILMLTP--NGRFQTNTRLCLSISDYHP------------DTWNPAWTVST 109
Query: 525 VLLSVISLL--NEPNTFS--PANVDASVMYRRWRDSKGKDKEYENIIRKQAQVARMEAEK 358
++ ++S + N+P S + + ++ ++ + KDK + + ++A R E EK
Sbjct: 110 IITGLMSFMNDNQPTLGSLVTSESERKLLAKKSKQWNLKDKSFCALFPEEADQIREEMEK 169
>AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein15 protein.
Length = 218
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = -3
Query: 687 PYSPPSIRFLTKVWHPNVYENGDLCISI--LHPPVDDPQSGELPCERWNPTQSVRTVLLS 514
P+SPP+I +T + N LC+SI HP E WNP +V +L+
Sbjct: 79 PWSPPAITMITP--NGRFQTNTRLCLSISDYHP------------ESWNPGWTVSAILIG 124
Query: 513 VISLLNE 493
+ S +NE
Sbjct: 125 LHSFMNE 131
>U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein6 protein.
Length = 314
Score = 28.7 bits (61), Expect = 5.3
Identities = 23/67 (34%), Positives = 32/67 (47%)
Frame = -3
Query: 699 PLTTPYSPPSIRFLTKVWHPNVYENGDLCISILHPPVDDPQSGELPCERWNPTQSVRTVL 520
P P PP++ LT + N +C+SI SG P E W P+ S+RT L
Sbjct: 65 PADYPMKPPNLILLTP--NGRFELNKKVCLSI---------SGYHP-ETWLPSWSIRTAL 112
Query: 519 LSVISLL 499
L++I L
Sbjct: 113 LALIGFL 119
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = -3
Query: 645 HPNVY---ENGDLCISILHPPVDDPQSGELPCERWNPTQSVRTVLLSVISLLNEPNTFS 478
HPN+ ++G+ I I V Q+GEL CE NP S + + + + + TF+
Sbjct: 2410 HPNITVTDKDGEHTIEI--SAVTPEQAGELSCEATNPVGSKKRDVQLAVKKVGDAPTFA 2466
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = -3
Query: 645 HPNVY---ENGDLCISILHPPVDDPQSGELPCERWNPTQSVRTVLLSVISLLNEPNTFS 478
HPN+ ++G+ I I V Q+GEL CE NP S + + + + + TF+
Sbjct: 1770 HPNITVTDKDGEHTIEI--SAVTPEQAGELSCEATNPVGSKKRDVQLAVKKVGDAPTFA 1826
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = -3
Query: 645 HPNVY---ENGDLCISILHPPVDDPQSGELPCERWNPTQSVRTVLLSVISLLNEPNTFS 478
HPN+ ++G+ I I V Q+GEL CE NP S + + + + + TF+
Sbjct: 2410 HPNITVTDKDGEHTIEI--SAVTPEQAGELSCEATNPVGSKKRDVQLAVKKVGDAPTFA 2466
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = -3
Query: 645 HPNVY---ENGDLCISILHPPVDDPQSGELPCERWNPTQSVRTVLLSVISLLNEPNTFS 478
HPN+ ++G+ I I V Q+GEL CE NP S + + + + + TF+
Sbjct: 2410 HPNITVTDKDGEHTIEI--SAVTPEQAGELSCEATNPVGSKKRDVQLAVKKVGDAPTFA 2466
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = -3
Query: 645 HPNVY---ENGDLCISILHPPVDDPQSGELPCERWNPTQSVRTVLLSVISLLNEPNTFS 478
HPN+ ++G+ I I V Q+GEL CE NP S + + + + + TF+
Sbjct: 1770 HPNITVTDKDGEHTIEI--SAVTPEQAGELSCEATNPVGSKKRDVQLAVKKVGDAPTFA 1826
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = -3
Query: 645 HPNVY---ENGDLCISILHPPVDDPQSGELPCERWNPTQSVRTVLLSVISLLNEPNTFS 478
HPN+ ++G+ I I V Q+GEL CE NP S + + + + + TF+
Sbjct: 2410 HPNITVTDKDGEHTIEI--SAVTPEQAGELSCEATNPVGSKKRDVQLAVKKVGDAPTFA 2466
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,031,469
Number of Sequences: 27780
Number of extensions: 262440
Number of successful extensions: 745
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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