Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C22
         (711 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   1.9  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   1.9  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   9.9  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 115 PHPRLQRSPCRLLRNPSRGQPGP 183
           PHP L   P  L  +P+   PGP
Sbjct: 232 PHPGLSPHPPHLSSHPAIVTPGP 254


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 115 PHPRLQRSPCRLLRNPSRGQPGP 183
           PHP L   P  L  +P+   PGP
Sbjct: 124 PHPGLSPHPPHLSSHPAIVTPGP 146


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 115 PHPRLQRSPCRLLRNPSRGQPGPHGASENSPSSIPSPTY 231
           P+P +QR     L  P      P    + +P S P PTY
Sbjct: 267 PYP-MQRPKSASLSPPPHVYNPPDHIQQATPYSAPGPTY 304


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 169 GQPGPHGASENSPSSIPSPT 228
           G   PHG++ +S  + PSP+
Sbjct: 252 GNITPHGSNTSSLITTPSPS 271


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,126
Number of Sequences: 336
Number of extensions: 2339
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)