Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C22
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    57   3e-09
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    57   3e-09
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    40   3e-04
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    29   0.87 
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    28   1.5  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   8.1  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 24/26 (92%), Positives = 24/26 (92%)
 Frame = -2

Query: 266 DLXYXKRAFVHWYVGEGMEEGEFSEA 189
           DL Y KRAFVHWYVGEGMEEGEFSEA
Sbjct: 400 DLMYSKRAFVHWYVGEGMEEGEFSEA 425



 Score = 37.1 bits (82), Expect = 0.002
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = -3

Query: 187 REDLAALEKDYEEVGMDS 134
           REDLAALE+DYEEVG DS
Sbjct: 426 REDLAALERDYEEVGQDS 443


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 24/26 (92%), Positives = 24/26 (92%)
 Frame = -2

Query: 266 DLXYXKRAFVHWYVGEGMEEGEFSEA 189
           DL Y KRAFVHWYVGEGMEEGEFSEA
Sbjct: 396 DLMYSKRAFVHWYVGEGMEEGEFSEA 421



 Score = 37.1 bits (82), Expect = 0.002
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = -3

Query: 187 REDLAALEKDYEEVGMDS 134
           REDLAALE+DYEEVG DS
Sbjct: 422 REDLAALERDYEEVGQDS 439


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 14/23 (60%), Positives = 20/23 (86%)
 Frame = -2

Query: 257 YXKRAFVHWYVGEGMEEGEFSEA 189
           + ++AF+HWY GEGM+E EF+EA
Sbjct: 389 FRRKAFLHWYTGEGMDEMEFTEA 411


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 23/79 (29%), Positives = 27/79 (34%)
 Frame = +1

Query: 115 PHPRLQRSPCRLLRNPSRGQPGPHGASENSPSSIPSPTYQCTKARLXYXRSXFGQGXPXX 294
           PH     S  RL +N    Q         +PS    P Y    A +    S FG   P  
Sbjct: 265 PHNSFPASADRLQKNHPV-QSSNFNPYTPAPSITVPPNYIPNTAMMGPSYSSFGDTDPRT 323

Query: 295 XXGGFGXIATAXXPGQFPP 351
              G G   TA   G +PP
Sbjct: 324 YPAGMGPNPTAARNGFYPP 342


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
 Frame = +1

Query: 148 LLRNPSRGQPGPHGASENSPSSIPSPTYQCTKARLXYXRSXFGQGXPXXXXG-GFGXIAT 324
           L+ + +R  P P G S N+P ++ SP          Y     G   P    G G+   + 
Sbjct: 412 LMTSDTRSVPPPPGFSTNAPKAVKSPEISAPPG--LYRGLSSGASIPSAPPGFGYQQPSF 469

Query: 325 AXXPGQFPPG----XXXGVGFXXXFKP 393
              PG FPP        G GF    +P
Sbjct: 470 PYSPG-FPPSAYNQNRTGYGFPDTSRP 495


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
 Frame = +1

Query: 157 NPSRGQPGP----HGASENSPSSIPSPTYQCTKA 246
           +P++ +PG      G+  +SP+S+PS  ++ TKA
Sbjct: 28  DPAKTEPGTPKGYDGSKNSSPASVPSWIHEKTKA 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,950,432
Number of Sequences: 5004
Number of extensions: 30805
Number of successful extensions: 63
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)