Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_C21
(802 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2... 85 1e-17
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa... 84 2e-17
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 29 1.0
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 27 2.3
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo... 26 7.2
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac... 26 7.2
SPAC16E8.03 |gna1|spgna1|glucosamine-phosphate N-acetyltransfera... 26 7.2
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 25 9.5
>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 85.0 bits (201), Expect = 1e-17
Identities = 38/53 (71%), Positives = 44/53 (83%)
Frame = -3
Query: 431 SGETEDTFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGVNAKYAG 273
SGET DTFI+ L VG+ GQ+K+GAPCRSERLAKYN++LRIEEELG YAG
Sbjct: 375 SGETADTFISHLTVGIGAGQLKSGAPCRSERLAKYNELLRIEEELGSEGVYAG 427
Score = 76.2 bits (179), Expect = 5e-15
Identities = 47/119 (39%), Positives = 65/119 (54%), Gaps = 1/119 (0%)
Frame = -2
Query: 786 KYDLDFKESRSXXRRLPVIR*XADVYXTSSKIFPWCPLRILLTRMIGLHGLTSLVARL-F 610
KYDLD K ++ + D+Y SK +P + + T + A F
Sbjct: 257 KYDLDIKAAKPKPENKLTYQQLTDLYVELSKKYPIVSIEDPFDQD-DWSAWTHMKAETDF 315
Query: 609 RLLVMI*XVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKRNGWGTMVSHR 433
+++ VTN KR+ TA++KK N LLLKVNQIGSVTES++A ++ GWG MVSHR
Sbjct: 316 QIVGDDLTVTNVKRLRTAIDKKCANALLLKVNQIGSVTESLNAVRMSYEAGWGVMVSHR 374
>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 440
Score = 84.2 bits (199), Expect = 2e-17
Identities = 38/53 (71%), Positives = 46/53 (86%)
Frame = -3
Query: 431 SGETEDTFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGVNAKYAG 273
SGET+D+FIA L VGL GQ+K+GAPCRSERLAKYN++LRIE+ LG +A YAG
Sbjct: 376 SGETDDSFIAHLAVGLEAGQMKSGAPCRSERLAKYNELLRIEDNLGDSAIYAG 428
Score = 70.1 bits (164), Expect = 3e-13
Identities = 31/51 (60%), Positives = 41/51 (80%)
Frame = -2
Query: 585 VTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKRNGWGTMVSHR 433
VTN KR++ A+E K N LL+K+NQIGS++E+IDA +AK+ GWG MVSHR
Sbjct: 325 VTNVKRLSKAIELKCANALLVKINQIGSLSETIDAANMAKKAGWGLMVSHR 375
Score = 46.8 bits (106), Expect = 4e-06
Identities = 15/37 (40%), Positives = 29/37 (78%)
Frame = -1
Query: 700 IKDFPMVSIEDPFDQDDWSAWANLTGRTPIQIVGDDL 590
I+ +P+V IEDPF ++DW A++ ++ +T ++++ DDL
Sbjct: 287 IEKYPIVFIEDPFSEEDWGAFSYMSSKTKVEVIADDL 323
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +1
Query: 346 ERHGAPVLI*PVDKPTTRSAIKVSSVSPESVRDHCAPSVPLGQQVSIN*LCYAADL 513
ER V PV + T S+ SP+ V APS G+ + N + Y A +
Sbjct: 252 ERGAGTVFYNPVSRLTQPLPSLASTASPQQVSPPAAPSTTSGEAIPENFVSYGAQV 307
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 27.5 bits (58), Expect = 2.3
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +3
Query: 219 TEFYVFLREFLDRSTEVLP--GVFGVDAKFLFNAQNLVV-LGETLRATRGAGLD 371
+ FY + E RS+EVLP +DAK A+ +++ T A GA LD
Sbjct: 1630 SSFYSLIHESFSRSSEVLPTSSDTNLDAKRAEEAEMIMIETPPTAEANTGAKLD 1683
>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 381 HGSD-QDRRPVSLGASRQVQPNSAH*RGTWRQ 289
+GSD RRP LG ++V + +G+WR+
Sbjct: 52 YGSDITPRRPKQLGLPKEVNTSECIDQGSWRK 83
>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -2
Query: 387 FVHGS-DQDRRPVSLGASRQVQPN 319
FV GS +Q+RRP+S +QPN
Sbjct: 519 FVQGSGNQNRRPISFPVISNMQPN 542
>SPAC16E8.03 |gna1|spgna1|glucosamine-phosphate
N-acetyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 111
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 186 KKVVLTMFVLNKQFNAYHVLQDCSE 112
K +VLT+ L N+Y V+ DCS+
Sbjct: 60 KLMVLTLIKLAFSLNSYKVILDCSD 84
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.4 bits (53), Expect = 9.5
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +1
Query: 304 SSMRRIWLYLARRSERHGAPVLI*PVDKPTTRSAIKVSSVSPESVRDHCAPSVPLGQQVS 483
SS R +WLY + GA I VDK + I + + P R +C P L + +
Sbjct: 446 SSKRVVWLYTILQLIGFGATFAITQVDKASIGFPIIILLLIP--FRTYCMPKWFLEEDLE 503
Query: 484 I 486
I
Sbjct: 504 I 504
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,011,130
Number of Sequences: 5004
Number of extensions: 58968
Number of successful extensions: 148
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -