Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C20
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...   141   9e-35
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    42   8e-05
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    42   1e-04
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    29   0.79 
SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit Med31|...    27   3.2  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    27   3.2  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    27   3.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   5.5  
SPAC14C4.16 |dad3||DASH complex subunit Dad3|Schizosaccharomyces...    25   9.7  

>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score =  141 bits (342), Expect = 9e-35
 Identities = 63/94 (67%), Positives = 82/94 (87%)
 Frame = -3

Query: 648 YISILNIIQGEVEPSQVHKSLQRIRERRLAAFIPWGPASVQVALSRRSPHVTAAHKVSGL 469
           +ISIL+IIQGE +P+ VHKSL RIRERR A+FIPWGPAS+QVALS++SP++   H+VSGL
Sbjct: 317 FISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL 376

Query: 468 LLANHTNISSLFDRCLQQFDKLRKREAFLEVFRQ 367
           +LANHT+I+SLF R L Q+D+LRKR AFLE +++
Sbjct: 377 MLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKK 410



 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 16/35 (45%), Positives = 25/35 (71%)
 Frame = -1

Query: 368 KEPMFRESLDELDASRGVVDELVHEYRAAATPDYV 264
           KE +F + L+E D+SR VV +L++EY A   P+Y+
Sbjct: 410 KEAIFEDDLNEFDSSRDVVADLINEYEACEDPNYL 444



 Score = 30.7 bits (66), Expect = 0.26
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -2

Query: 739 KXXVXDVMQRLXQPKNMMVSXSP 671
           K  V DVM+RL  PKN MVS +P
Sbjct: 289 KTTVLDVMRRLLLPKNQMVSVNP 311


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 42.3 bits (95), Expect = 8e-05
 Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
 Frame = -3

Query: 648 YISILNIIQGEVEPSQVHKSLQRIRERRLAAFIPWGPASVQVALSRRSP-HVTAAH--KV 478
           Y++   + +G+V P  V  ++  I+ +R   F+ W P   ++ +  R P H+  +   KV
Sbjct: 312 YMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKV 371

Query: 477 --SGLLLANHTNISSLFDRCLQQFDKLRKREAFL 382
             +  +L+N T+I+  + R   +FD +  + AF+
Sbjct: 372 DRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFV 405


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
 Frame = -3

Query: 648 YISILNIIQGEVEPSQVHKSLQRIRERRLAAFIPWGPASVQVALSRRSP-HV--TAAHKV 478
           Y++   + +G+V P  V  ++  I+ RR   F+ W P   ++ +    P HV  +   KV
Sbjct: 316 YMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKV 375

Query: 477 SG--LLLANHTNISSLFDRCLQQFDKLRKREAFL 382
           +    +L+N T+I+  + R   +FD +  + AF+
Sbjct: 376 NRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFV 409


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -3

Query: 570 RRLAAFIPWGPASVQVALSRRSPHVTAAHKVSGLLLANHTNISSLFD 430
           +R   FI   P    + +   SPH   +H    LLL +  N  SL D
Sbjct: 367 QRFFPFIDIPPVRDMLVIPSSSPHYNGSHNPKNLLLLSEDNSLSLLD 413


>SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit
           Med31|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 368 KEPMFRESLDELDASRGVVDELVHEYRAAATPDY 267
           K P FR  +   D S+ V DE+ +E+       Y
Sbjct: 79  KNPQFRNDISRADLSKQVNDEIYYEWLGKGLQQY 112


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -1

Query: 353 RESLDELDASRGVVDELVHEYRAAATPDYVH--WNPESSQI*HIQATECWIHITK 195
           RE   ELD+   +V E      + + PD+V   +N E S+  H++      +IT+
Sbjct: 460 RELGQELDSKEALVTEFKKRTESLSMPDHVKKVFNDELSKFQHLEPMAAEFNITR 514


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 389 RSWRCS-AKEPMFRESLDELDASRGVVDELVHEY 291
           R WR S  K+P + E +DE+DA     DE   E+
Sbjct: 306 RGWRTSNTKQPSYEEIIDEVDAENR-FDEDAEEF 338


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 298 TSTAPPPRPTTCTGTQRAAKYNT 230
           TST PPP  T+ TGT  +   +T
Sbjct: 367 TSTPPPPASTSSTGTSSSPLLST 389



 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 298 TSTAPPPRPTTCTGT 254
           TST PPP  T+ TGT
Sbjct: 313 TSTPPPPASTSSTGT 327


>SPAC14C4.16 |dad3||DASH complex subunit Dad3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 86

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +3

Query: 138 IIDLTTHLWHSSLNSAGDELRDMNPTFRRLYVLYLAALW 254
           ++ +   + ++  N+  D LRD+      +Y LY A++W
Sbjct: 27  LVKVLQDMVYNPSNNILDSLRDLEKEVGLVYTLYKASVW 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,423,150
Number of Sequences: 5004
Number of extensions: 42294
Number of successful extensions: 144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)