Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C20
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.5  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   2.5  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   2.5  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   2.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.8  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 459 NHTNISSLFDRCLQQFD 409
           NH+NIS L D  L+ +D
Sbjct: 2   NHSNISELLDNLLRGYD 18


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 425 VCNNSTSCASAKRSWRCSAK 366
           +CNNS+S      S++CS +
Sbjct: 362 ICNNSSSDKERNSSFKCSMR 381


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 165 AKDESSNL*F*DVDNLIYNQVPLCNLIYXP 76
           A +E+ +L F  +DN I+N+VP  + I+ P
Sbjct: 224 AYEETFSLVFTKIDNEIFNRVPF-DKIFPP 252


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 222 DGMLDSYHEAHHQQSLKKNA 163
           D ML  YH+  H Q L  +A
Sbjct: 3   DSMLPKYHQQFHHQQLFSSA 22


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 412 RQAAQARSVPGGVPPRSP 359
           R+  +A S  GGVP +SP
Sbjct: 583 RRPQRACSTTGGVPSKSP 600


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,391
Number of Sequences: 438
Number of extensions: 3386
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)