Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_C19
(774 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 285 5e-78
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 281 1e-76
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 116 5e-27
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 60 3e-10
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.24
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 29 0.74
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.74
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.3
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 1.3
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 1.3
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo... 27 2.3
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.2
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 6.9
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 9.1
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 285 bits (699), Expect = 5e-78
Identities = 125/157 (79%), Positives = 140/157 (89%)
Frame = -1
Query: 603 HEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQ 424
HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK++RTIQ
Sbjct: 287 HESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQ 346
Query: 423 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKR 244
FVDWCPTGFK+GI Y+PP VPG +AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KR
Sbjct: 347 FVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKR 406
Query: 243 AFAHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 133
AF HWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 407 AFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 443
Score = 40.3 bits (90), Expect = 3e-04
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -3
Query: 664 PRIHFPLVTYAPVISAEKAY 605
PRIHFPLVTY+P++SA KA+
Sbjct: 267 PRIHFPLVTYSPIVSAAKAF 286
Score = 33.5 bits (73), Expect = 0.034
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = -2
Query: 728 LRXDGAXNVTXTEFQTNXVPYPPYPLP 648
LR G+ NV EFQTN VPYP P
Sbjct: 246 LRFAGSLNVDLNEFQTNLVPYPRIHFP 272
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 281 bits (688), Expect = 1e-76
Identities = 124/157 (78%), Positives = 138/157 (87%)
Frame = -1
Query: 603 HEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQ 424
HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK KRTIQ
Sbjct: 283 HESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQ 342
Query: 423 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKR 244
FVDWCPTGFK+GI +PP + G ++AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KR
Sbjct: 343 FVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKR 402
Query: 243 AFAHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 133
AF HWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 403 AFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 439
Score = 41.5 bits (93), Expect = 1e-04
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = -3
Query: 664 PRIHFPLVTYAPVISAEKAY 605
PRIHFPLVTYAP++SA KA+
Sbjct: 263 PRIHFPLVTYAPIVSAAKAF 282
Score = 35.1 bits (77), Expect = 0.011
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -2
Query: 728 LRXDGAXNVTXTEFQTNXVPYPPYPLP 648
LR +G+ NV EFQTN VPYP P
Sbjct: 242 LRFEGSLNVDLAEFQTNLVPYPRIHFP 268
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 116 bits (278), Expect = 5e-27
Identities = 59/158 (37%), Positives = 90/158 (56%), Gaps = 3/158 (1%)
Frame = -1
Query: 600 EQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQF 421
+ +SV E+T F+ N MV DPRHG+Y+ L+RG V K+V+ I +++TK + F
Sbjct: 282 QAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYF 341
Query: 420 VDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRA 241
V+W P + PP DL + + + N+T+I E + RL +F M+ ++A
Sbjct: 342 VEWIPDNVLKAVCSVPPK-----DL---KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKA 393
Query: 240 FAHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGMD 136
F HWY GEGM+E EF+EA DL + + Y+E G+D
Sbjct: 394 FLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 60.5 bits (140), Expect = 3e-10
Identities = 38/151 (25%), Positives = 75/151 (49%), Gaps = 4/151 (2%)
Frame = -1
Query: 591 SVAEITNACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 415
+V ++ P NQMV +P + +++ + +G+ P DV+ ++ I+ +R F+
Sbjct: 291 TVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIP 350
Query: 414 WCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFA 235
W P +V ++ + P + ++ + ML+N T+IA + R ++D + + AF
Sbjct: 351 WGPASIQVALSKKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNAFL 405
Query: 234 HWYVGEGMEE---GEFSEAREDLAALEKDYE 151
Y E + E EF +R+ +A L +YE
Sbjct: 406 EQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 30.7 bits (66), Expect = 0.24
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -2
Query: 491 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 357
VV P + RP++P P LS V PV+ V + PP P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 29.1 bits (62), Expect = 0.74
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = -2
Query: 686 QTNXVPYPPYPLPTGHVRASHLCREGLP----MNSFPSPRSQTHASSPPTRW*NATPVMA 519
QTN P + P H SHL + +P +S PSP + + S PT + P +
Sbjct: 259 QTNLQLAPSFAAPQAHPLPSHLSQSNVPPQLSHSSVPSP-APPRSVSQPTYFSQPMPQFS 317
Query: 518 STWLAVCCTVV-TSYP 474
S+++ ++V T +P
Sbjct: 318 SSFVPGTSSIVPTLHP 333
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.1 bits (62), Expect = 0.74
Identities = 21/80 (26%), Positives = 34/80 (42%)
Frame = -2
Query: 608 LPMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVL 429
+P S +P + T+ ++ + +TPV ++ CT TS P T + S P
Sbjct: 413 VPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPY--TSTPVTSTPLTT 470
Query: 428 SNSSTGVQPVSRSVSTTSHP 369
+N +T S TS P
Sbjct: 471 TNCTTSTSIPYTSTPVTSTP 490
Score = 29.1 bits (62), Expect = 0.74
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Frame = -2
Query: 704 VTXTEFQTNX-VPYPPYPLPTGHVRASHLCREGLPMNSFPSPRSQTHASSPPTRW*NATP 528
+T T T+ VPY P+ + + S P+ S +P + T+ ++ + +TP
Sbjct: 491 LTTTNCTTSTSVPYTSTPVTSSNYTIS----SSTPVTS--TPVTTTNCTTSTSVLYTSTP 544
Query: 527 VMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTS 375
V ++ CT TS P T P S ++ S++ PV+ + TTS
Sbjct: 545 VTSTPLATTNCTTSTSVPYTST-PVTSSNYTISSSTPVTSTPVTTTNCTTS 594
Score = 25.4 bits (53), Expect = 9.1
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 3/100 (3%)
Frame = -2
Query: 665 PPYPLPTGHVRASHLCREGLPMNSFP---SPRSQTHASSPPTRW*NATPVMASTWLAVCC 495
PP T + +P S P +P + T+ ++ + +TPV ++ C
Sbjct: 414 PPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNC 473
Query: 494 TVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTS 375
T TS P T + S P +N +T S TS
Sbjct: 474 TTSTSIPY--TSTPVTSTPLTTTNCTTSTSVPYTSTPVTS 511
Score = 25.4 bits (53), Expect = 9.1
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Frame = -2
Query: 674 VPYPPYPLPTGHVRASHLCRE-GLPMNSFP---SPRSQTHASSPPTRW*NATPVMASTWL 507
VPY P+ + + ++ +P S P +P + T+ ++ + +TPV +S +
Sbjct: 456 VPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYT 515
Query: 506 AVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQ-PVSRSVSTTS 375
T VTS P T + + SVL S+ P++ + TTS
Sbjct: 516 ISSSTPVTSTPV--TTTNCTTSTSVLYTSTPVTSTPLATTNCTTS 558
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -1
Query: 579 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 454
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 451 SDGRVHILGYDVTTVQHTASHVLAMTGVAFHHLVGGLEACVCDLGDGK 594
S G +LGY ++ A++V+A + V HL+ G D + K
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK 454
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -2
Query: 287 GLALTTSSTSCTPSVLSRTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 114
G+ TS TS T S S++ S+P P W P+ S+ TP+ V
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207
Query: 113 EPKSTK 96
EP+ TK
Sbjct: 208 EPRFTK 213
>SPCC63.06 |||human WDR89 family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 331
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 284 LALTTSSTSCTPSVLSRTGTSVRVWRRESSPKPVRTW 174
+AL + T S L+R+ SV++W S K +R W
Sbjct: 105 IALNKKNQFATGSELTRSLASVQLWDVRSEQKLIRQW 141
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -2
Query: 455 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 369
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 474 WVRRHHGTAYSKPCTCHDGG 533
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -2
Query: 458 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 363
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,926,061
Number of Sequences: 5004
Number of extensions: 63270
Number of successful extensions: 242
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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