Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_C18
(839 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 359 e-100
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 355 3e-99
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 148 8e-37
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 85 1e-17
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 34 0.029
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.15
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.20
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.82
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.4
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 1.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.4
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 1.4
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 5.8
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.8
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 7.6
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 359 bits (882), Expect = e-100
Identities = 161/204 (78%), Positives = 181/204 (88%)
Frame = -3
Query: 741 SSITASLXXXGALNVDLTEFQTNLVXTPRIHFPLVTYAPVISAEKAYHEQLSVAEITNAC 562
SSITASL G+LNVDL EFQTNLV PRIHFPLVTY+P++SA KA+HE SV EITN C
Sbjct: 240 SSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQC 299
Query: 561 FEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGI 382
FEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI
Sbjct: 300 FEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGI 359
Query: 381 NYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE 202
Y+PP VPG +AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEE
Sbjct: 360 CYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEE 419
Query: 201 GEFSEAREDLAALEKDYEEVGMDS 130
GEFSEAREDLAALE+DYEEVG DS
Sbjct: 420 GEFSEAREDLAALERDYEEVGQDS 443
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 355 bits (874), Expect = 3e-99
Identities = 161/204 (78%), Positives = 179/204 (87%)
Frame = -3
Query: 741 SSITASLXXXGALNVDLTEFQTNLVXTPRIHFPLVTYAPVISAEKAYHEQLSVAEITNAC 562
SSITASL G+LNVDL EFQTNLV PRIHFPLVTYAP++SA KA+HE SV EITN C
Sbjct: 236 SSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQC 295
Query: 561 FEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGI 382
FEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI
Sbjct: 296 FEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGI 355
Query: 381 NYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE 202
+PP + G ++AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEE
Sbjct: 356 CDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEE 415
Query: 201 GEFSEAREDLAALEKDYEEVGMDS 130
GEFSEAREDLAALE+DYEEVG DS
Sbjct: 416 GEFSEAREDLAALERDYEEVGQDS 439
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 148 bits (359), Expect = 8e-37
Identities = 75/206 (36%), Positives = 117/206 (56%), Gaps = 3/206 (1%)
Frame = -3
Query: 741 SSITASLXXXGALNVDLTEFQTNLVXTPRIHFPLVTYAPVISAEKAYHEQLSVAEITNAC 562
+ +T S G LN DL + N+V PR+HF +V +AP+ + + + +SV E+T
Sbjct: 234 AGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQM 293
Query: 561 FEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGI 382
F+ N MV DPRHG+Y+ L+RG V K+V+ I +++TK + FV+W P +
Sbjct: 294 FDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAV 353
Query: 381 NYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE 202
PP DL + + + N+T+I E + RL +F M+ ++AF+HWY GEGM+E
Sbjct: 354 CSVPPK-----DL---KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDE 405
Query: 201 GEFSEAR---EDLAALEKDYEEVGMD 133
EF+EA DL + + Y+E G+D
Sbjct: 406 MEFTEAESNMNDLVSEYQQYQEAGID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 85.0 bits (201), Expect = 1e-17
Identities = 55/208 (26%), Positives = 102/208 (49%), Gaps = 7/208 (3%)
Frame = -3
Query: 750 TXXSSITASLXXXGALNVDLTEFQTNLVXTPRIHFPLVTYAPVIS---AEKAYHEQLSVA 580
T S+ T +L G +N DL +L+ +PR HF L +Y P + E + +V
Sbjct: 234 TVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVL 293
Query: 579 EITNACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCP 403
++ P NQMV +P + +++ + +G+ P DV+ ++ I+ +R F+ W P
Sbjct: 294 DVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGP 353
Query: 402 TGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 223
+V ++ + P + ++ + ML+N T+IA + R ++D + + AF+ Y
Sbjct: 354 ASIQVALSKKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNAFLEQY 408
Query: 222 VGEGMEE---GEFSEAREDLAALEKDYE 148
E + E EF +R+ +A L +YE
Sbjct: 409 KKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 33.9 bits (74), Expect = 0.029
Identities = 33/114 (28%), Positives = 49/114 (42%)
Frame = -1
Query: 686 SSRLTWCXPPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTW 507
S+ +T PP STSH S T +++P +MN T + PPT N T A
Sbjct: 63 STNITSIVPPPSTSHNSTT--TTVPPTTSMN--------TTTTVPPTTSLNTTTTTAPPT 112
Query: 506 LAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEAT 345
V T P + P+ N++T V P + + +TTS P E++
Sbjct: 113 THVNSTTTVVPPTTHVNTTTVVPPTTHVNTTTVVPPTTHA-NTTSFVPTTTESS 165
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.5 bits (68), Expect = 0.15
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Frame = -1
Query: 695 TSPSSRLTWCXPPVSTSHWSRTRQSSLPRRPTM--NSFPSPRSQTHASSPPTRW*NATPV 522
TS S L+ +++ T S+ P PT+ S +P + T+ ++ + +TPV
Sbjct: 381 TSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPV 440
Query: 521 MASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHP 366
++ CT TS P T + S P +N +T S TS P
Sbjct: 441 TSTPLATTNCTTSTSVPY--TSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTP 490
Score = 28.3 bits (60), Expect = 1.4
Identities = 28/105 (26%), Positives = 49/105 (46%)
Frame = -1
Query: 686 SSRLTWCXPPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTW 507
S+ + + PV++S++ T SS P T P + T+ ++ + +TPV ++
Sbjct: 499 STSVPYTSTPVTSSNY--TISSSTPVTST------PVTTTNCTTSTSVLYTSTPVTSTPL 550
Query: 506 LAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTS 372
CT TS P T P S ++ S++ PV+ + TTS
Sbjct: 551 ATTNCTTSTSVPYTST-PVTSSNYTISSSTPVTSTPVTTTNCTTS 594
Score = 26.2 bits (55), Expect = 5.8
Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 3/100 (3%)
Frame = -1
Query: 662 PPVSTSHWSRTRQSSLPRRPTMNSFP---SPRSQTHASSPPTRW*NATPVMASTWLAVCC 492
PP S+S T + S P +P + T+ ++ + +TPV ++ C
Sbjct: 414 PPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNC 473
Query: 491 TVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTS 372
T TS P T + S P +N +T S TS
Sbjct: 474 TTSTSIPY--TSTPVTSTPLTTTNCTTSTSVPYTSTPVTS 511
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 31.1 bits (67), Expect = 0.20
Identities = 24/89 (26%), Positives = 33/89 (37%)
Frame = -1
Query: 620 SLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPS 441
S+P+ P P S + P P + S VV P + RP++P
Sbjct: 513 SVPQPPAAPVVPEAPSVHQPPAAPV-----APEVPSAPQRPAAPVVPEAPSVPQRPAVPV 567
Query: 440 KPSVLSNSSTGVQPVSRSVSTTSHPPWCP 354
P LS V PV+ V + PP P
Sbjct: 568 VPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.1 bits (62), Expect = 0.82
Identities = 23/81 (28%), Positives = 41/81 (50%)
Frame = -1
Query: 653 STSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSY 474
STS + T SS RP +S S +H SS ++ ++ PV ++ + + +S+
Sbjct: 377 STSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKS-SSAPVSSAFYHNSTSSRSSSH 435
Query: 473 PRM*TRPSLPSKPSVLSNSST 411
+ SL SKP + ++SS+
Sbjct: 436 SSSHSLSSLSSKPILTASSSS 456
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -3
Query: 576 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 451
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 448 SDGRVHILGYDVTTVQHTASHVLAMTGVAFHHLVGGLEACVCDLGDGK 591
S G +LGY ++ A++V+A + V HL+ G D + K
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK 454
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -1
Query: 689 PSSRLTWCXPPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTR 543
P+++ P S + T +SS+P P N+ PSP S + AS+ P R
Sbjct: 1232 PTAKAPPVPAPSSEAPSVSTPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.3 bits (60), Expect = 1.4
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -1
Query: 284 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 111
G+ TS TS T S S++ S+P P W P+ S+ TP+ V
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207
Query: 110 EPKSTK 93
EP+ TK
Sbjct: 208 EPRFTK 213
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 626 QSSLPRRPTMNSFPSPRSQTHASSPPTR 543
+ SLPRRP+ +P S T ++ PP +
Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPPVK 765
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -1
Query: 452 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 366
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 471 WVRRHHGTAYSKPCTCHDGG 530
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,149,773
Number of Sequences: 5004
Number of extensions: 66855
Number of successful extensions: 258
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -