Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C17
         (814 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459           34   0.15 
05_04_0028 + 17302359-17302445,17303887-17303952,17305415-173054...    31   1.4  
05_06_0052 + 25199253-25199304,25199676-25199949,25200709-25201069     29   3.3  
05_03_0039 - 7621613-7622695                                           29   3.3  

>03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459
          Length = 341

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
 Frame = -2

Query: 639 TLTAQCPSMSRS---QFRTPSRYQCPPLTPSR--STSRTQ*KRPCRSQLTSPSTGHTQ-- 481
           T+ A  P+  RS   + R  +    PPL P +  + +    KRP  S  ++ S  H++  
Sbjct: 4   TMLASVPTRPRSHPFRRRRGAAAAAPPLLPDQIAAAAAAAAKRPAESSTSASSCFHSEVI 63

Query: 480 STSRSTCLCTLRSPYRTQLRYRYQ 409
           S + +TC  +L +  R + R RYQ
Sbjct: 64  SATSTTCPTSLAAAQRPEKRPRYQ 87


>05_04_0028 +
           17302359-17302445,17303887-17303952,17305415-17305489,
           17305638-17305737,17305819-17305865,17305937-17305994,
           17306161-17306210,17306417-17306473,17306561-17306703,
           17306793-17306834,17307083-17307124,17308239-17308272,
           17308342-17308443,17310373-17310652,17311202-17311332,
           17311676-17311773,17312525-17312717
          Length = 534

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 22/84 (26%), Positives = 38/84 (45%)
 Frame = -2

Query: 696 REARPIXR*KNQCPTPLKYTLTAQCPSMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCR 517
           R   P  R  ++  +P+K    +   S S  + R+PSR   P  +P R  S +  K P +
Sbjct: 223 RSRSPRSRSASRSHSPVKERSRSASQSRSPVKERSPSRSPPPATSPPREKSAS--KSPVK 280

Query: 516 SQLTSPSTGHTQSTSRSTCLCTLR 445
           S+  S S    +  ++  C+  L+
Sbjct: 281 SRSLSRSPSPVRDINQKLCIFRLQ 304


>05_06_0052 + 25199253-25199304,25199676-25199949,25200709-25201069
          Length = 228

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 456 TGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 545
           +GTC    T  G+ TGM TG  T   TG G
Sbjct: 99  SGTCKYPATASGVGTGMGTGTSTGTGTGVG 128


>05_03_0039 - 7621613-7622695
          Length = 360

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -3

Query: 593 PRQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 477
           P+ G    P P  + HP P  + +  P  HP  +  P P
Sbjct: 162 PKPGPKPEPKPEPKPHPEPKPEPKPKPVPHPEPKPEPKP 200



 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -3

Query: 596 VPRQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 477
           VP       P P  + HP P  + +  P  HP+ +  P P
Sbjct: 189 VPHPEPKPEPKPEPKPHPEPKPEPKPEPKLHPKPEPKPHP 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,284,128
Number of Sequences: 37544
Number of extensions: 283567
Number of successful extensions: 1110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)