Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_C17
(814 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein. 35 0.30
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su... 35 0.30
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 35 0.30
AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein pro... 35 0.30
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro... 35 0.30
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 35 0.30
AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein. 34 0.70
AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein pro... 34 0.70
X74370-1|CAA52408.1| 543|Homo sapiens mucin protein. 33 0.93
AK124971-1|BAC86011.1| 172|Homo sapiens protein ( Homo sapiens ... 32 2.1
AK223352-1|BAD97072.1| 507|Homo sapiens nucleoporin 54kDa varia... 31 5.0
AK222752-1|BAD96472.1| 508|Homo sapiens nucleoporin 54kDa varia... 31 5.0
AK001517-1|BAA91735.1| 484|Homo sapiens protein ( Homo sapiens ... 31 5.0
AF157322-1|AAF67488.1| 505|Homo sapiens nucleoporin p54 protein... 31 5.0
Y13472-1|CAA73875.1| 1379|Homo sapiens FIM protein protein. 30 8.7
Y09445-1|CAA70592.1| 513|Homo sapiens TBX5 protein. 30 8.7
X58521-1|CAA41411.1| 522|Homo sapiens nucleoporin p62 protein. 30 8.7
L14076-1|AAA36649.1| 494|Homo sapiens pre-mRNA splicing factor ... 30 8.7
CR541721-1|CAG46522.1| 522|Homo sapiens NUP62 protein. 30 8.7
BT007415-1|AAP36083.1| 494|Homo sapiens splicing factor, argini... 30 8.7
BC101107-1|AAI01108.1| 522|Homo sapiens nucleoporin 62kDa protein. 30 8.7
BC101106-1|AAI01107.1| 522|Homo sapiens nucleoporin 62kDa protein. 30 8.7
BC101105-1|AAI01106.1| 522|Homo sapiens nucleoporin 62kDa protein. 30 8.7
BC101104-1|AAI01105.1| 522|Homo sapiens nucleoporin 62kDa protein. 30 8.7
BC095410-1|AAH95410.1| 522|Homo sapiens nucleoporin 62kDa protein. 30 8.7
BC050717-1|AAH50717.1| 522|Homo sapiens nucleoporin 62kDa protein. 30 8.7
BC036372-1|AAH36372.1| 1377|Homo sapiens zinc finger, MYM-type 2... 30 8.7
BC036187-1|AAH36187.1| 904|Homo sapiens serine/arginine repetit... 30 8.7
BC014842-1|AAH14842.1| 522|Homo sapiens nucleoporin 62kDa protein. 30 8.7
BC003663-1|AAH03663.1| 522|Homo sapiens nucleoporin 62kDa protein. 30 8.7
BC002781-1|AAH02781.1| 494|Homo sapiens splicing factor, argini... 30 8.7
AL590729-1|CAI14326.1| 494|Homo sapiens splicing factor, argini... 30 8.7
AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetit... 30 8.7
AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetit... 30 8.7
AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetit... 30 8.7
AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetit... 30 8.7
AL357500-1|CAH71635.1| 494|Homo sapiens splicing factor, argini... 30 8.7
AL138688-3|CAH71823.1| 755|Homo sapiens zinc finger, MYM-type 2... 30 8.7
AL138688-1|CAH71822.1| 1375|Homo sapiens zinc finger, MYM-type 2... 30 8.7
AL137119-3|CAH70135.1| 755|Homo sapiens zinc finger, MYM-type 2... 30 8.7
AL137119-1|CAH70133.1| 1375|Homo sapiens zinc finger, MYM-type 2... 30 8.7
AJ224901-1|CAA12204.1| 1377|Homo sapiens ZNF198 protein protein. 30 8.7
AJ007676-1|CAA07604.1| 1377|Homo sapiens ZNF198 protein protein. 30 8.7
AF419855-1|AAP97290.1| 820|Homo sapiens Ser/Arg-related nuclear... 30 8.7
AF060181-1|AAC23591.1| 1113|Homo sapiens zinc finger protein pro... 30 8.7
AF048977-1|AAC09321.1| 820|Homo sapiens Ser/Arg-related nuclear... 30 8.7
AF035374-1|AAB88464.1| 699|Homo sapiens Cys-rich protein protein. 30 8.7
AF012126-1|AAC01561.1| 757|Homo sapiens zinc finger protein pro... 30 8.7
AB209856-1|BAD93093.1| 419|Homo sapiens splicing factor, argini... 30 8.7
>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
Length = 1022
Score = 35.1 bits (77), Expect = 0.30
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = -2
Query: 729 RAYSQTXALPRREARPIXR*KNQCPTPLKYTLT-AQCPSMSRSQFRTPSRYQCPPLTPSR 553
R+ S+T A R +R R +++ TP + + ++ P+ RS+ R+P R + +P+R
Sbjct: 583 RSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPAR 642
Query: 552 STSRTQ*KRPCRSQLTSPSTGHTQSTSRS 466
+ R++ + P R + T + SRS
Sbjct: 643 RSGRSRSRTPARRGRSRSRTPARRGRSRS 671
>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator
subunit SRm300 protein.
Length = 2296
Score = 35.1 bits (77), Expect = 0.30
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = -2
Query: 729 RAYSQTXALPRREARPIXR*KNQCPTPLKYTLT-AQCPSMSRSQFRTPSRYQCPPLTPSR 553
R+ S+T A R +R R +++ TP + + ++ P+ RS+ R+P R + +P+R
Sbjct: 583 RSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPAR 642
Query: 552 STSRTQ*KRPCRSQLTSPSTGHTQSTSRS 466
+ R++ + P R + T + SRS
Sbjct: 643 RSGRSRSRTPARRGRSRSRTPARRGRSRS 671
Score = 35.1 bits (77), Expect = 0.30
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 11/108 (10%)
Frame = -2
Query: 720 SQTXALPRREARPIXR*KNQCPTP--LKYTLTAQCPSMSR-SQFRTP------SRYQCPP 568
S T R A P+ R +++ TP + ++ P+ R S+ RTP SR + PP
Sbjct: 1905 SVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPP 1964
Query: 567 LTPSRSTSRTQ--*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRT 430
+T RS SRT +R RS+ TSP T +S SR++ + RS RT
Sbjct: 1965 VTRRRSRSRTSPITRRRSRSR-TSPVT-RRRSRSRTSPVTRRRSRSRT 2010
Score = 31.9 bits (69), Expect = 2.8
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 15/115 (13%)
Frame = -2
Query: 729 RAYSQTXALPRREAR----PIXR*KNQCPTPL-KYTLTAQCPSMSR--SQFRTP------ 589
R+ S+ + RR +R P+ R +++ TP + ++ P ++R S+ RTP
Sbjct: 1910 RSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRR 1969
Query: 588 SRYQCPPLTPSRSTSRTQ--*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRT 430
SR + P+T RS SRT +R RS+ TSP T +S SR++ + RS RT
Sbjct: 1970 SRSRTSPITRRRSRSRTSPVTRRRSRSR-TSPVT-RRRSRSRTSPVTRRRSRSRT 2022
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein
protein.
Length = 2752
Score = 35.1 bits (77), Expect = 0.30
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = -2
Query: 729 RAYSQTXALPRREARPIXR*KNQCPTPLKYTLT-AQCPSMSRSQFRTPSRYQCPPLTPSR 553
R+ S+T A R +R R +++ TP + + ++ P+ RS+ R+P R + +P+R
Sbjct: 583 RSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPAR 642
Query: 552 STSRTQ*KRPCRSQLTSPSTGHTQSTSRS 466
+ R++ + P R + T + SRS
Sbjct: 643 RSGRSRSRTPARRGRSRSRTPARRGRSRS 671
Score = 33.9 bits (74), Expect = 0.70
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Frame = -2
Query: 720 SQTXALPRREARPIXR*KNQCPTPLKYTLTAQCPSMSRSQFRTPSRYQCPPLTPSRSTSR 541
S T R A P+ R +++ TP +T + R SR + PP+T RS SR
Sbjct: 1905 SVTRRRSRSRASPVSRRRSRSRTP---PVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSR 1961
Query: 540 TQ--*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRT 430
T +R RS+ TSP T +S SR++ + RS RT
Sbjct: 1962 TPPVTRRRSRSR-TSPIT-RRRSRSRTSPVTRRRSRSRT 1998
Score = 31.1 bits (67), Expect = 5.0
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Frame = -2
Query: 729 RAYSQTXALPRREAR----PIXR*KNQCPTPLKYTLTAQCPSMSRSQFRTPSRYQCPPLT 562
R+ S+T + RR +R P+ R +++ T + S + R SR + P+T
Sbjct: 1945 RSRSRTPPVTRRRSRSRTPPVTRRRSRSRT--SPITRRRSRSRTSPVTRRRSRSRTSPVT 2002
Query: 561 PSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRTQLRYR 415
RS SRT RS+ +P +S SR+ L RS R+ L R
Sbjct: 2003 RRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIR 2051
Score = 30.3 bits (65), Expect = 8.7
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Frame = -2
Query: 729 RAYSQTXALPRREAR----PIXR*KNQCPTPLKYTLTAQCPSMSRSQFRTPSRYQCPPLT 562
R+ S+T + RR +R PI R +++ T + S + R SR + P+T
Sbjct: 1957 RSRSRTPPVTRRRSRSRTSPITRRRSRSRT--SPVTRRRSRSRTSPVTRRRSRSRTSPVT 2014
Query: 561 PSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRT 430
RS SRT RS+ +P +S SRS RS RT
Sbjct: 2015 RRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRT 2058
>AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein
protein.
Length = 956
Score = 35.1 bits (77), Expect = 0.30
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = -2
Query: 729 RAYSQTXALPRREARPIXR*KNQCPTPLKYTLT-AQCPSMSRSQFRTPSRYQCPPLTPSR 553
R+ S+T A R +R R +++ TP + + ++ P+ RS+ R+P R + +P+R
Sbjct: 548 RSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPAR 607
Query: 552 STSRTQ*KRPCRSQLTSPSTGHTQSTSRS 466
+ R++ + P R + T + SRS
Sbjct: 608 RSGRSRSRTPARRGRSRSRTPARRGRSRS 636
>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
protein.
Length = 1262
Score = 35.1 bits (77), Expect = 0.30
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = -2
Query: 729 RAYSQTXALPRREARPIXR*KNQCPTPLKYTLT-AQCPSMSRSQFRTPSRYQCPPLTPSR 553
R+ S+T A R +R R +++ TP + + ++ P+ RS+ R+P R + +P+R
Sbjct: 373 RSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPAR 432
Query: 552 STSRTQ*KRPCRSQLTSPSTGHTQSTSRS 466
+ R++ + P R + T + SRS
Sbjct: 433 RSGRSRSRTPARRGRSRSRTPARRGRSRS 461
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 35.1 bits (77), Expect = 0.30
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = -2
Query: 729 RAYSQTXALPRREARPIXR*KNQCPTPLKYTLT-AQCPSMSRSQFRTPSRYQCPPLTPSR 553
R+ S+T A R +R R +++ TP + + ++ P+ RS+ R+P R + +P+R
Sbjct: 631 RSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPAR 690
Query: 552 STSRTQ*KRPCRSQLTSPSTGHTQSTSRS 466
+ R++ + P R + T + SRS
Sbjct: 691 RSGRSRSRTPARRGRSRSRTPARRGRSRS 719
Score = 33.9 bits (74), Expect = 0.70
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Frame = -2
Query: 720 SQTXALPRREARPIXR*KNQCPTPLKYTLTAQCPSMSRSQFRTPSRYQCPPLTPSRSTSR 541
S T R A P+ R +++ TP +T + R SR + PP+T RS SR
Sbjct: 1953 SVTRRRSRSRASPVSRRRSRSRTP---PVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSR 2009
Query: 540 TQ--*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRT 430
T +R RS+ TSP T +S SR++ + RS RT
Sbjct: 2010 TPPVTRRRSRSR-TSPIT-RRRSRSRTSPVTRRRSRSRT 2046
Score = 31.1 bits (67), Expect = 5.0
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Frame = -2
Query: 729 RAYSQTXALPRREAR----PIXR*KNQCPTPLKYTLTAQCPSMSRSQFRTPSRYQCPPLT 562
R+ S+T + RR +R P+ R +++ T + S + R SR + P+T
Sbjct: 1993 RSRSRTPPVTRRRSRSRTPPVTRRRSRSRT--SPITRRRSRSRTSPVTRRRSRSRTSPVT 2050
Query: 561 PSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRTQLRYR 415
RS SRT RS+ +P +S SR+ L RS R+ L R
Sbjct: 2051 RRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIR 2099
Score = 30.3 bits (65), Expect = 8.7
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Frame = -2
Query: 729 RAYSQTXALPRREAR----PIXR*KNQCPTPLKYTLTAQCPSMSRSQFRTPSRYQCPPLT 562
R+ S+T + RR +R PI R +++ T + S + R SR + P+T
Sbjct: 2005 RSRSRTPPVTRRRSRSRTSPITRRRSRSRT--SPVTRRRSRSRTSPVTRRRSRSRTSPVT 2062
Query: 561 PSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRT 430
RS SRT RS+ +P +S SRS RS RT
Sbjct: 2063 RRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRT 2106
>AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein.
Length = 1791
Score = 33.9 bits (74), Expect = 0.70
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Frame = -2
Query: 720 SQTXALPRREARPIXR*KNQCPTPLKYTLTAQCPSMSRSQFRTPSRYQCPPLTPSRSTSR 541
S T R A P+ R +++ TP +T + R SR + PP+T RS SR
Sbjct: 937 SVTRRRSRSRASPVSRRRSRSRTP---PVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSR 993
Query: 540 TQ--*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRT 430
T +R RS+ TSP T +S SR++ + RS RT
Sbjct: 994 TPPVTRRRSRSR-TSPIT-RRRSRSRTSPVTRRRSRSRT 1030
Score = 31.1 bits (67), Expect = 5.0
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Frame = -2
Query: 729 RAYSQTXALPRREAR----PIXR*KNQCPTPLKYTLTAQCPSMSRSQFRTPSRYQCPPLT 562
R+ S+T + RR +R P+ R +++ T + S + R SR + P+T
Sbjct: 977 RSRSRTPPVTRRRSRSRTPPVTRRRSRSRT--SPITRRRSRSRTSPVTRRRSRSRTSPVT 1034
Query: 561 PSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRTQLRYR 415
RS SRT RS+ +P +S SR+ L RS R+ L R
Sbjct: 1035 RRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIR 1083
Score = 30.3 bits (65), Expect = 8.7
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Frame = -2
Query: 729 RAYSQTXALPRREAR----PIXR*KNQCPTPLKYTLTAQCPSMSRSQFRTPSRYQCPPLT 562
R+ S+T + RR +R PI R +++ T + S + R SR + P+T
Sbjct: 989 RSRSRTPPVTRRRSRSRTSPITRRRSRSRT--SPVTRRRSRSRTSPVTRRRSRSRTSPVT 1046
Query: 561 PSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRT 430
RS SRT RS+ +P +S SRS RS RT
Sbjct: 1047 RRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRT 1090
>AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein
protein.
Length = 1275
Score = 33.9 bits (74), Expect = 0.70
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Frame = -2
Query: 720 SQTXALPRREARPIXR*KNQCPTPLKYTLTAQCPSMSRSQFRTPSRYQCPPLTPSRSTSR 541
S T R A P+ R +++ TP +T + R SR + PP+T RS SR
Sbjct: 428 SVTRRRSRSRASPVSRRRSRSRTP---PVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSR 484
Query: 540 TQ--*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRT 430
T +R RS+ TSP T +S SR++ + RS RT
Sbjct: 485 TPPVTRRRSRSR-TSPIT-RRRSRSRTSPVTRRRSRSRT 521
Score = 31.1 bits (67), Expect = 5.0
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Frame = -2
Query: 729 RAYSQTXALPRREAR----PIXR*KNQCPTPLKYTLTAQCPSMSRSQFRTPSRYQCPPLT 562
R+ S+T + RR +R P+ R +++ T + S + R SR + P+T
Sbjct: 468 RSRSRTPPVTRRRSRSRTPPVTRRRSRSRT--SPITRRRSRSRTSPVTRRRSRSRTSPVT 525
Query: 561 PSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRTQLRYR 415
RS SRT RS+ +P +S SR+ L RS R+ L R
Sbjct: 526 RRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIR 574
Score = 30.3 bits (65), Expect = 8.7
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Frame = -2
Query: 729 RAYSQTXALPRREAR----PIXR*KNQCPTPLKYTLTAQCPSMSRSQFRTPSRYQCPPLT 562
R+ S+T + RR +R PI R +++ T + S + R SR + P+T
Sbjct: 480 RSRSRTPPVTRRRSRSRTSPITRRRSRSRT--SPVTRRRSRSRTSPVTRRRSRSRTSPVT 537
Query: 561 PSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRT 430
RS SRT RS+ +P +S SRS RS RT
Sbjct: 538 RRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRT 581
>X74370-1|CAA52408.1| 543|Homo sapiens mucin protein.
Length = 543
Score = 33.5 bits (73), Expect = 0.93
Identities = 24/66 (36%), Positives = 31/66 (46%)
Frame = -2
Query: 660 CPTPLKYTLTAQCPSMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQ 481
CP PL+ P S T S Y C PL S +T T P LTSP+T T
Sbjct: 20 CPPPLRGR-----PGSSTELAPTISHYDCSPLD-STATPSTPGTAPPPKVLTSPATTPTA 73
Query: 480 STSRST 463
++S++T
Sbjct: 74 TSSKAT 79
>AK124971-1|BAC86011.1| 172|Homo sapiens protein ( Homo sapiens
cDNA FLJ42981 fis, clone BRTHA2007422. ).
Length = 172
Score = 32.3 bits (70), Expect = 2.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 608 EASSVPRQGTSARPLPRREAHPVPSRKGRAVPS*HP 501
EA R G + P PR+ HP+P + +P+ HP
Sbjct: 20 EAPGATRVGPPSTPAPRKVRHPLPPSQAGILPALHP 55
>AK223352-1|BAD97072.1| 507|Homo sapiens nucleoporin 54kDa variant
protein.
Length = 507
Score = 31.1 bits (67), Expect = 5.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 468 FSMWTGYGLSTGMLTGNGTAFSTGYG 545
F TG+G +TG TG GT TG G
Sbjct: 61 FGFGTGFGTTTGTSTGLGTGLGTGLG 86
>AK222752-1|BAD96472.1| 508|Homo sapiens nucleoporin 54kDa variant
protein.
Length = 508
Score = 31.1 bits (67), Expect = 5.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 468 FSMWTGYGLSTGMLTGNGTAFSTGYG 545
F TG+G +TG TG GT TG G
Sbjct: 61 FGFGTGFGTTTGTSTGLGTGLGTGLG 86
>AK001517-1|BAA91735.1| 484|Homo sapiens protein ( Homo sapiens
cDNA FLJ10655 fis, clone NT2RP2005933, weakly similar to
NUCLEOPORIN NUP57. ).
Length = 484
Score = 31.1 bits (67), Expect = 5.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 468 FSMWTGYGLSTGMLTGNGTAFSTGYG 545
F TG+G +TG TG GT TG G
Sbjct: 61 FGFGTGFGTTTGTSTGLGTGLGTGLG 86
>AF157322-1|AAF67488.1| 505|Homo sapiens nucleoporin p54 protein
protein.
Length = 505
Score = 31.1 bits (67), Expect = 5.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 468 FSMWTGYGLSTGMLTGNGTAFSTGYG 545
F TG+G +TG TG GT TG G
Sbjct: 60 FGFGTGFGTTTGTSTGLGTGLGTGLG 85
>Y13472-1|CAA73875.1| 1379|Homo sapiens FIM protein protein.
Length = 1379
Score = 30.3 bits (65), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 538 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 443
PV VP PV +PV P P+ + +P IE+
Sbjct: 907 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 938
>Y09445-1|CAA70592.1| 513|Homo sapiens TBX5 protein.
Length = 513
Score = 30.3 bits (65), Expect = 8.7
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 444 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGY 542
+S CT T WTGY ST LT +S G+
Sbjct: 404 YSSCTVTTVQPWTGYPTSTSPLTSPRGPWSLGW 436
>X58521-1|CAA41411.1| 522|Homo sapiens nucleoporin p62 protein.
Length = 522
Score = 30.3 bits (65), Expect = 8.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 444 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 545
FS+ T T + TG+ T L GT FS G G
Sbjct: 60 FSLATQTPATQTTGFTFGTATLASGGTGFSLGIG 93
>L14076-1|AAA36649.1| 494|Homo sapiens pre-mRNA splicing factor
protein.
Length = 494
Score = 30.3 bits (65), Expect = 8.7
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -2
Query: 558 SRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRTQLR 421
SRS S+++ P S+ S S T+S S+S RSP R++ R
Sbjct: 444 SRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSR 489
>CR541721-1|CAG46522.1| 522|Homo sapiens NUP62 protein.
Length = 522
Score = 30.3 bits (65), Expect = 8.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 444 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 545
FS+ T T + TG+ T L GT FS G G
Sbjct: 60 FSLATQTPATQTTGFTFGTATLASGGTGFSLGIG 93
>BT007415-1|AAP36083.1| 494|Homo sapiens splicing factor,
arginine/serine-rich 4 protein.
Length = 494
Score = 30.3 bits (65), Expect = 8.7
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -2
Query: 558 SRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRTQLR 421
SRS S+++ P S+ S S T+S S+S RSP R++ R
Sbjct: 444 SRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSR 489
>BC101107-1|AAI01108.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 30.3 bits (65), Expect = 8.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 444 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 545
FS+ T T + TG+ T L GT FS G G
Sbjct: 60 FSLATQTPATQTTGFTFGTATLASGGTGFSLGIG 93
>BC101106-1|AAI01107.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 30.3 bits (65), Expect = 8.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 444 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 545
FS+ T T + TG+ T L GT FS G G
Sbjct: 60 FSLATQTPATQTTGFTFGTATLASGGTGFSLGIG 93
>BC101105-1|AAI01106.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 30.3 bits (65), Expect = 8.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 444 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 545
FS+ T T + TG+ T L GT FS G G
Sbjct: 60 FSLATQTPATQTTGFTFGTATLASGGTGFSLGIG 93
>BC101104-1|AAI01105.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 30.3 bits (65), Expect = 8.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 444 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 545
FS+ T T + TG+ T L GT FS G G
Sbjct: 60 FSLATQTPATQTTGFTFGTATLASGGTGFSLGIG 93
>BC095410-1|AAH95410.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 30.3 bits (65), Expect = 8.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 444 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 545
FS+ T T + TG+ T L GT FS G G
Sbjct: 60 FSLATQTPATQTTGFTFGTATLASGGTGFSLGIG 93
>BC050717-1|AAH50717.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 30.3 bits (65), Expect = 8.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 444 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 545
FS+ T T + TG+ T L GT FS G G
Sbjct: 60 FSLATQTPATQTTGFTFGTATLASGGTGFSLGIG 93
>BC036372-1|AAH36372.1| 1377|Homo sapiens zinc finger, MYM-type 2
protein.
Length = 1377
Score = 30.3 bits (65), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 538 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 443
PV VP PV +PV P P+ + +P IE+
Sbjct: 905 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 936
>BC036187-1|AAH36187.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 30.3 bits (65), Expect = 8.7
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 596 VPRQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 477
+ R+ + + P RR A P P K RA PS P+R+ SP
Sbjct: 600 IQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSP 639
>BC014842-1|AAH14842.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 30.3 bits (65), Expect = 8.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 444 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 545
FS+ T T + TG+ T L GT FS G G
Sbjct: 60 FSLATQTPATQTTGFTFGTATLASGGTGFSLGIG 93
>BC003663-1|AAH03663.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 30.3 bits (65), Expect = 8.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 444 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 545
FS+ T T + TG+ T L GT FS G G
Sbjct: 60 FSLATQTPATQTTGFTFGTATLASGGTGFSLGIG 93
>BC002781-1|AAH02781.1| 494|Homo sapiens splicing factor,
arginine/serine-rich 4 protein.
Length = 494
Score = 30.3 bits (65), Expect = 8.7
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -2
Query: 558 SRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRTQLR 421
SRS S+++ P S+ S S T+S S+S RSP R++ R
Sbjct: 444 SRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSR 489
>AL590729-1|CAI14326.1| 494|Homo sapiens splicing factor,
arginine/serine-rich 4 protein.
Length = 494
Score = 30.3 bits (65), Expect = 8.7
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -2
Query: 558 SRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRTQLR 421
SRS S+++ P S+ S S T+S S+S RSP R++ R
Sbjct: 444 SRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSR 489
>AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 30.3 bits (65), Expect = 8.7
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 596 VPRQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 477
+ R+ + + P RR A P P K RA PS P+R+ SP
Sbjct: 600 IQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSP 639
>AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 30.3 bits (65), Expect = 8.7
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 596 VPRQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 477
+ R+ + + P RR A P P K RA PS P+R+ SP
Sbjct: 609 IQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSP 648
>AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 30.3 bits (65), Expect = 8.7
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 596 VPRQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 477
+ R+ + + P RR A P P K RA PS P+R+ SP
Sbjct: 600 IQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSP 639
>AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 30.3 bits (65), Expect = 8.7
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 596 VPRQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 477
+ R+ + + P RR A P P K RA PS P+R+ SP
Sbjct: 609 IQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSP 648
>AL357500-1|CAH71635.1| 494|Homo sapiens splicing factor,
arginine/serine-rich 4 protein.
Length = 494
Score = 30.3 bits (65), Expect = 8.7
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -2
Query: 558 SRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRTQLR 421
SRS S+++ P S+ S S T+S S+S RSP R++ R
Sbjct: 444 SRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSR 489
>AL138688-3|CAH71823.1| 755|Homo sapiens zinc finger, MYM-type 2
protein.
Length = 755
Score = 30.3 bits (65), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 538 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 443
PV VP PV +PV P P+ + +P IE+
Sbjct: 283 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 314
>AL138688-1|CAH71822.1| 1375|Homo sapiens zinc finger, MYM-type 2
protein.
Length = 1375
Score = 30.3 bits (65), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 538 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 443
PV VP PV +PV P P+ + +P IE+
Sbjct: 903 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 934
>AL137119-3|CAH70135.1| 755|Homo sapiens zinc finger, MYM-type 2
protein.
Length = 755
Score = 30.3 bits (65), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 538 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 443
PV VP PV +PV P P+ + +P IE+
Sbjct: 283 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 314
>AL137119-1|CAH70133.1| 1375|Homo sapiens zinc finger, MYM-type 2
protein.
Length = 1375
Score = 30.3 bits (65), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 538 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 443
PV VP PV +PV P P+ + +P IE+
Sbjct: 903 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 934
>AJ224901-1|CAA12204.1| 1377|Homo sapiens ZNF198 protein protein.
Length = 1377
Score = 30.3 bits (65), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 538 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 443
PV VP PV +PV P P+ + +P IE+
Sbjct: 905 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 936
>AJ007676-1|CAA07604.1| 1377|Homo sapiens ZNF198 protein protein.
Length = 1377
Score = 30.3 bits (65), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 538 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 443
PV VP PV +PV P P+ + +P IE+
Sbjct: 905 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 936
>AF419855-1|AAP97290.1| 820|Homo sapiens Ser/Arg-related nuclear
matrix protein protein.
Length = 820
Score = 30.3 bits (65), Expect = 8.7
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 596 VPRQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 477
+ R+ + + P RR A P P K RA PS P+R+ SP
Sbjct: 598 IQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSP 637
>AF060181-1|AAC23591.1| 1113|Homo sapiens zinc finger protein
protein.
Length = 1113
Score = 30.3 bits (65), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 538 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 443
PV VP PV +PV P P+ + +P IE+
Sbjct: 641 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 672
>AF048977-1|AAC09321.1| 820|Homo sapiens Ser/Arg-related nuclear
matrix protein protein.
Length = 820
Score = 30.3 bits (65), Expect = 8.7
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 596 VPRQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 477
+ R+ + + P RR A P P K RA PS P+R+ SP
Sbjct: 598 IQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSP 637
>AF035374-1|AAB88464.1| 699|Homo sapiens Cys-rich protein protein.
Length = 699
Score = 30.3 bits (65), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 538 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 443
PV VP PV +PV P P+ + +P IE+
Sbjct: 633 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 664
>AF012126-1|AAC01561.1| 757|Homo sapiens zinc finger protein
protein.
Length = 757
Score = 30.3 bits (65), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 538 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 443
PV VP PV +PV P P+ + +P IE+
Sbjct: 285 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 316
>AB209856-1|BAD93093.1| 419|Homo sapiens splicing factor,
arginine/serine-rich 4 variant protein.
Length = 419
Score = 30.3 bits (65), Expect = 8.7
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -2
Query: 558 SRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRTQLR 421
SRS S+++ P S+ S S T+S S+S RSP R++ R
Sbjct: 369 SRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSR 414
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,346,159
Number of Sequences: 237096
Number of extensions: 1455999
Number of successful extensions: 8253
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 7429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8113
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10092110758
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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