Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_C17
(814 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40040.1 68415.m04920 defective chloroplasts and leaves prote... 35 0.074
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 33 0.30
At4g00890.1 68417.m00120 proline-rich family protein contains pr... 31 1.2
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 30 2.1
At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid t... 29 2.8
At3g16460.2 68416.m02097 jacalin lectin family protein contains ... 29 2.8
At3g16460.1 68416.m02098 jacalin lectin family protein contains ... 29 2.8
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 29 3.7
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 29 3.7
At1g25550.1 68414.m03172 myb family transcription factor contain... 28 6.4
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 28 8.5
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 28 8.5
At2g20430.1 68415.m02384 p21-rho-binding domain-containing prote... 28 8.5
>At2g40040.1 68415.m04920 defective chloroplasts and leaves
protein-related / DCL protein-related similar to DCL
protein, chloroplast precursor (Defective chloroplasts
and leaves protein) (Swiss-Prot:Q42463) [Lycopersicon
esculentum]
Length = 839
Score = 34.7 bits (76), Expect = 0.074
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Frame = -2
Query: 630 AQCPSMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLC- 454
AQ S S++Q ++ S+ Q + S+S S++Q + +SQ SPS TQS S++
Sbjct: 768 AQAQSPSQTQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSPSQTQTQSPSQTQAQAQ 827
Query: 453 --TLRSPYRTQ 427
+ +SP +TQ
Sbjct: 828 SPSSQSPSQTQ 838
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 32.7 bits (71), Expect = 0.30
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Frame = -2
Query: 684 PIXR*KNQCPTPLKYTLTAQCPSMSRSQ----FRTPSRYQCPPLTPSRSTSRTQ*KRPCR 517
P R ++ P+P K ++ S SRS+ R+ SR P++PSRS R++ + R
Sbjct: 5 PQRRRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGR 64
Query: 516 SQLTSPST 493
S++ +P T
Sbjct: 65 SEVENPGT 72
>At4g00890.1 68417.m00120 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 431
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = -2
Query: 657 PTPLKYTLTAQCPSMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSP 499
P P + PSM + PPL PS+S T+ + P SQ +SP
Sbjct: 175 PPPQEAKTPPSSPSMMLNATEEFESQPKPPLLPSKSIDETRLRSPLMSQASSP 227
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 29.9 bits (64), Expect = 2.1
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -2
Query: 630 AQCPSMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSP--STGHTQSTSRSTCL 457
++ PS SRS+ R+ SR + + SRS S ++ K P + SP S + S SRS
Sbjct: 205 SRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDLSKSPRRSLSRSISKSRSPSP 264
Query: 456 CTLRSPYRTQLR 421
+SP R R
Sbjct: 265 DKKKSPPRAMSR 276
>At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein identical to
pEARLI 1 (Accession No. L43080): an Arabidopsis member
of a conserved gene family (PGF95-099), Plant Physiol.
109 (4), 1497 (1995); contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 168
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 572 RPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 477
+P+P + PVPS K + VPS ++PSP
Sbjct: 37 KPVPSPKPKPVPSPKPKPVPSPSVPSPSVPSP 68
>At3g16460.2 68416.m02097 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 647
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +3
Query: 456 TGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 545
TGT TG G TG TG GT TG G
Sbjct: 138 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 167
>At3g16460.1 68416.m02098 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 705
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +3
Query: 456 TGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 545
TGT TG G TG TG GT TG G
Sbjct: 138 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 167
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 29.1 bits (62), Expect = 3.7
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = -2
Query: 684 PIXR*KNQCPTPLKYTLTAQCPSMSRS----QFRTPSRYQCPPLTPSRSTSRTQ*KRPCR 517
P R ++ P+P K ++ S SRS + R+ SR P++PSRS R++ R
Sbjct: 5 PQRRRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRSR-SRSRG 63
Query: 516 SQLTSPST 493
S++ +P T
Sbjct: 64 SEVENPGT 71
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 612 SRSQFRTPSRYQCPPLTPSRSTS-RTQ*KRPCRSQLTSPSTGHTQSTSRS 466
S+S+ RTP RY+ P RS S R + P R + SP +S SRS
Sbjct: 125 SKSRSRTPPRYRRSPSYGRRSYSPRARSPPPPRRRSPSPPPARGRSYSRS 174
>At1g25550.1 68414.m03172 myb family transcription factor contains
Pfam domain, PF00249: Myb-like DNA-binding domain
Length = 344
Score = 28.3 bits (60), Expect = 6.4
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = -2
Query: 699 RREARPIXR*KNQCPTPLKYTLTAQCPSMSRSQFRTPSRYQCPPLT--PSRSTSRTQ*KR 526
RR A P+ R + P ++ + S T +R P T P STS + R
Sbjct: 266 RRPATPVVRTGGENPQQRQFMVMEGIWVPSHDT--TNNRVYAPVATQPPQSSTSGERSNR 323
Query: 525 PCRSQLTSPSTGHT 484
C+S TS +T HT
Sbjct: 324 GCKSPATSSTTTHT 337
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 591 PSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRS 466
PS+ + L+P R+ S++ P RSQ SPS+ + RS
Sbjct: 374 PSKSRSRSLSPKRTVSKSTSVSPRRSQSKSPSSSPRWNGGRS 415
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -3
Query: 569 PLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 477
P PRR P P R +PS PRR +PSP
Sbjct: 463 PPPRRAGLPSPPPAQR-LPSPPPRRAGLPSP 492
>At2g20430.1 68415.m02384 p21-rho-binding domain-containing protein
contains Pfam PF00786: P21-Rho-binding domain
Length = 203
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 192 LRVLSQCVRSEDVEYVRIWNPTTILLVTH 278
LR +SQ SE E ++I NPT + V H
Sbjct: 8 LRYISQVFESEKEEEIQIGNPTDVKHVAH 36
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,679,037
Number of Sequences: 28952
Number of extensions: 207616
Number of successful extensions: 671
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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