Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_C16
(833 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 32 0.54
At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2) ... 30 1.6
At1g21380.1 68414.m02675 VHS domain-containing protein / GAT dom... 30 2.2
At1g68360.1 68414.m07808 zinc finger protein-related similar to ... 29 2.9
At4g24060.1 68417.m03456 Dof-type zinc finger domain-containing ... 29 5.0
At1g67680.1 68414.m07723 expressed protein 29 5.0
At5g60410.2 68418.m07579 DNA-binding family protein contains Pfa... 28 8.8
At5g60410.1 68418.m07578 DNA-binding family protein contains Pfa... 28 8.8
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi... 28 8.8
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 28 8.8
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 31.9 bits (69), Expect = 0.54
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +1
Query: 718 TPTPXYNSXKRPXXPPPXELAELXPXPXPXVMVTPTP 828
TPTP S P PPP P P P V P P
Sbjct: 139 TPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVPTDPMP 175
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Frame = +1
Query: 718 TPTPXYNSXKRPXXPPPXELAELXPXPXPXVM---VTPTP 828
TPTP S P PPP P P P V TPTP
Sbjct: 103 TPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPPPTPTP 142
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Frame = +1
Query: 718 TPTPXYNSXKRPXXPPPXELAELXPXPXPXVM---VTPTP 828
TPTP S P PPP P P P V TPTP
Sbjct: 121 TPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPPPTPTP 160
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Frame = +1
Query: 721 PTPXYNSXKRPXXPPPXELAELXPXPXPXVM---VTPTP 828
PTP S P PPP P P P V TPTP
Sbjct: 86 PTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPPPTPTP 124
>At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2)
identical to WIP2 protein [Arabidopsis thaliana]
gi|18027012|gb|AAL55722; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 383
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +2
Query: 140 AGTSFCPHPMPQATSPANL*RLSPMGQARGAPPSPWQVSLPSCPPAHTKL 289
+ T+ PHP+P T P++ G R PP P + P PP L
Sbjct: 24 SSTNPSPHPLPPVTPPSSFFFFPQSGDLRRPPPPP---TPPPSPPLREAL 70
>At1g21380.1 68414.m02675 VHS domain-containing protein / GAT
domain-containing protein weak similarity to Hrs [Rattus
norvegicus] GI:8547026; contains Pfam profiles PF00790:
VHS domain, PF03127: GAT domain
Length = 506
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 164 PMPQATSPANL*RLSPM-GQARGAPPSPWQVSLP-SCPPAHTKLSCRRNLVP 313
P+PQ+ SP + P+ Q PP+PW+ P PP+ +S R N P
Sbjct: 377 PVPQSKSPEHALFTKPVYDQTEQLPPAPWETQEPRKYPPS---MSARTNKRP 425
>At1g68360.1 68414.m07808 zinc finger protein-related similar to
zinc finger protein GI:790683 from [Arabidopsis
thaliana]
Length = 244
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +3
Query: 327 AAANCSEGSAPYRFRFSSVITAYLP---WRPKTSFPQPLATQFLLVSKLSPGXREADHVD 497
AAAN S + +F + +++A+ P ++ PQP+ ++ + ++SP H
Sbjct: 113 AAANFSNAGSASQFLRNPIVSAFAPPPHLLSSSAVPQPMGGPWMYLPRVSPSQLHVSHGC 172
Query: 498 VLGEVEG 518
V+ + G
Sbjct: 173 VIQDGSG 179
>At4g24060.1 68417.m03456 Dof-type zinc finger domain-containing
protein Dof zinc finger protein - Oryza
sativa,PID:d1042342
Length = 342
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = +2
Query: 146 TSFCPHPMPQATSPANL*RLSPMGQARGAPPSPWQVSLPSCPPAHTKLSCRRN 304
T+ CP P PQ P S G+ + P V+ P C +TK N
Sbjct: 20 TNTCPKPQPQPLQPQQ--PPSVGGERKARPEKDQAVNCPRCNSTNTKFCYYNN 70
>At1g67680.1 68414.m07723 expressed protein
Length = 664
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = -2
Query: 436 ANGWGKDVFGLQGRYAVITEENRNRYGAEPSLQFAAAANQTWDQVPSARQFRVRRGTGGQ 257
A + K + L G AV ++ YGA+P AA+++Q + A++ R R+ +
Sbjct: 523 AESYEKQLKPLPGLKAVDVDKLEKTYGAKPIEGAAASSSQEEVKKEKAKRKRKRKPKYPK 582
Query: 256 GHLPGRRWSPP 224
G P PP
Sbjct: 583 GFDPANPGPPP 593
>At5g60410.2 68418.m07579 DNA-binding family protein contains Pfam
profiles: PF02037 SAP domain, PF02891 MIZ zinc finger,
PF00628 PHD-finger
Length = 885
Score = 27.9 bits (59), Expect = 8.8
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 11/69 (15%)
Frame = -3
Query: 279 CAGGQEGRDTCQGDG---------GAPLACPIGDSRYKLAG--LVAWGIGCGQKDVPAVY 133
C GG G D D G L CP+ SR K+AG L +GC DV V
Sbjct: 334 CIGGGGGDDNADSDSDIEVVADFFGVNLRCPMSGSRIKVAGRFLPCVHMGCFDLDV-FVE 392
Query: 132 ANVARMRSW 106
N R R W
Sbjct: 393 LN-QRSRKW 400
>At5g60410.1 68418.m07578 DNA-binding family protein contains Pfam
profiles: PF02037 SAP domain, PF02891 MIZ zinc finger,
PF00628 PHD-finger
Length = 873
Score = 27.9 bits (59), Expect = 8.8
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 11/69 (15%)
Frame = -3
Query: 279 CAGGQEGRDTCQGDG---------GAPLACPIGDSRYKLAG--LVAWGIGCGQKDVPAVY 133
C GG G D D G L CP+ SR K+AG L +GC DV V
Sbjct: 334 CIGGGGGDDNADSDSDIEVVADFFGVNLRCPMSGSRIKVAGRFLPCVHMGCFDLDV-FVE 392
Query: 132 ANVARMRSW 106
N R R W
Sbjct: 393 LN-QRSRKW 400
>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
to proline-rich protein [Arabidopsis thaliana]
gi|6782442|gb|AAF28388; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 448
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 721 PTPXYNSXKRPXXPPPXELAELXPXPXPXVMVTPTP 828
P P Y + PPP + +L P P V P P
Sbjct: 273 PVPVYKPPPKIEHPPPVPVHKLPKKPCPPKKVDPPP 308
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = +1
Query: 688 SPV*XXRMFRTPTPXYNSXKRPXXPPPXELAELXPXPXPXVMVTPTP 828
SP +F TP P S P PPP P P P V P P
Sbjct: 409 SPPPPAPIFSTP-PTLTSPPPPSPPPPVYSPPPPPPPPPPVYSPPPP 454
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,295,077
Number of Sequences: 28952
Number of extensions: 430481
Number of successful extensions: 1669
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1636
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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