Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C14
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    29   1.0  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    28   1.8  
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi...    27   4.1  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    26   5.5  
SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transf...    26   5.5  
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    26   5.5  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 467  LRSHISLFFTLHSSFTQIHTQIFHGKVLNHNS 562
            L + + LF T+ S F  I  + FHG +LN  S
Sbjct: 2761 LGNPVGLFTTITSGFADIFYEPFHGFILNEGS 2792


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +2

Query: 368 NATLLLQEERQCLCTQRMLFISAFPWDRYNTHKLRSHISLFFTLHSSFTQIHTQI 532
           N+T +++  RQ  CT+ + +  A  +D  +  K R  +S   +L S   ++ + I
Sbjct: 61  NSTFVVKCNRQYPCTRCLKYGEACTYDERDNRKKRHSLSYLHSLESQLARLESFI 115


>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
           Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +3

Query: 123 QLM*LIYHPQVE---VYQYTTYDNTSDFYKNV 209
           Q+M ++ HP +     Y YTT DN+ + Y N+
Sbjct: 75  QIMRIMKHPNIVDLIAYYYTTGDNSDEVYLNL 106


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 402 VSVPKECFSYLLSLGTDITHINSEVIF 482
           V  PKEC + L++L ++IT  + +++F
Sbjct: 208 VQAPKECAAILVNLMSNITQDDQKLVF 234


>SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transfer
           protein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
 Frame = +1

Query: 100 ILIINGHLNLCN*FITHKSRFISTQHMTTLAIFIKMFIISLPKGLKC--YHTFVPRYTES 273
           + I+N  L++C+          + +      I  K   ISLP  +    YH     Y   
Sbjct: 108 VRIVNERLDICD----KAYELAAVECPVEPGIITKQATISLPWAIPPGRYHVLATAYNAD 163

Query: 274 NER*NCVYASVLF 312
            E+  CV ASV F
Sbjct: 164 GEQLTCVSASVSF 176


>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 481 FIVFHITFILHTNTHADLSWESFESQQHAYN 573
           F V ++  I+HT  H    W S+E  +   N
Sbjct: 14  FYVLYLEKIIHTRPHKKCDWRSWEQWESTGN 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,985,358
Number of Sequences: 5004
Number of extensions: 60773
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)