Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C14
         (803 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20810| Best HMM Match : rve (HMM E-Value=0.00014)                   31   1.4  
SB_31142| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_13856| Best HMM Match : CXC (HMM E-Value=0.021)                     28   7.7  

>SB_20810| Best HMM Match : rve (HMM E-Value=0.00014)
          Length = 801

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -2

Query: 622 NLRAGTEKVTPXKERKSCRRAVVIQNFPMKDLRVYL 515
           +LR G +K     E  SCRR   I   P   +RVYL
Sbjct: 484 SLRRGMKKTVEPAEPTSCRRVAYIAWIPFLTIRVYL 519


>SB_31142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 611 WDRKGNAXQGKEEL*ACCCDSKLSHERSACVF 516
           WD   +    K EL  CC D +LS E+ A  F
Sbjct: 21  WDLNHSGYIEKAELKQCCSDLRLSEEKLAITF 52


>SB_13856| Best HMM Match : CXC (HMM E-Value=0.021)
          Length = 464

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
 Frame = +1

Query: 220 LPKGLKCYHTFV---PRYTESNER*NCVYASVLFCKSSKVILD-LLSVNMMVNECNITIA 387
           LPK L CY T+V   P    S+++ + VY   +  + S + +  LL+ +  V +  IT+ 
Sbjct: 35  LPKQLHCYFTWVIHGPMDFASDKKLSEVYKRAVILRQSTISMTALLTASFSVEDLPITVM 94

Query: 388 RGTTMSLYPKNAFHICFPL 444
                 L  +N  H  FP+
Sbjct: 95  LKDFAWLLVRNLTH--FPV 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,734,869
Number of Sequences: 59808
Number of extensions: 430483
Number of successful extensions: 938
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)