Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C14
         (803 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61550.1 68414.m06934 S-locus protein kinase, putative simila...    30   1.6  
At3g14840.1 68416.m01874 leucine-rich repeat family protein / pr...    29   4.8  
At1g23450.1 68414.m02938 pentatricopeptide (PPR) repeat-containi...    29   4.8  
At3g22100.1 68416.m02788 basic helix-loop-helix (bHLH) family pr...    28   8.3  
At1g61430.1 68414.m06922 S-locus protein kinase, putative simila...    28   8.3  

>At1g61550.1 68414.m06934 S-locus protein kinase, putative similar
           to receptor protein kinase [Ipomoea trifida]
           gi|836954|gb|AAC23542; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 802

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = +1

Query: 211 IISLPKGLKCYHTFVPRYTESNER*N----CVYASVLFCKSS 324
           ++S+P   KC+  FVP+++E  +R N    CV  + L C+ +
Sbjct: 290 VMSIPPKCKCFKGFVPQFSEEWKRGNWTGGCVRRTELLCQGN 331


>At3g14840.1 68416.m01874 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain; contains 2 predicted transmembrane domains
          Length = 112

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 614 GWDRKGNAXQGKEEL*ACCCDSKLSHERSACVFV 513
           GW R  NA +G E+   C C S + H  + CV +
Sbjct: 64  GW-RNPNAAKGFEDAVTCNCSSVICHVTNMCVLL 96


>At1g23450.1 68414.m02938 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 661

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 381 YCKRNDNVSVPKECFSYLLSLGTDIT--HINSEVI 479
           +C RN ++   K+   Y+L +G D++  H+ S +I
Sbjct: 324 FCSRNSDIQSGKQIHCYVLKMGFDVSSLHVQSALI 358


>At3g22100.1 68416.m02788 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 252

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 470 RSHISLFFTLHSSF-TQIHTQIFHGKVLNHNSTPTTLPFL 586
           R H+S    L   F    HTQ+FH    N ++T TT PFL
Sbjct: 49  RHHLSESTRLEQIFYDSTHTQLFH----NDDTTTTTTPFL 84


>At1g61430.1 68414.m06922 S-locus protein kinase, putative similar
           to receptor protein kinase [Ipomoea trifida]
           gi|836954|gb|AAC23542; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 806

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = +1

Query: 211 IISLPKGLKCYHTFVPRYTESNER*N----CVYASVLFCKSS 324
           ++S+P   KC+  FVP++ +  ++ N    CV  + L C+ +
Sbjct: 294 VVSIPPKCKCFKGFVPKFAKEWKKGNWTSGCVRRTELHCQGN 335


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,086,294
Number of Sequences: 28952
Number of extensions: 296549
Number of successful extensions: 723
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)