Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C13
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    29   0.98 
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    27   4.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   9.2  
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    25   9.2  

>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 182 AISKIRSTIF*NVYFFYLCHVC 117
           A+  I S IF N +FFYLC  C
Sbjct: 27  ALVIILSVIFINFFFFYLCRCC 48


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 671 GP-TPVHVPAPYPVEKPVPFAVPS*EAS 591
           GP +PV  PA  PVE  VP  +P  ++S
Sbjct: 44  GPASPVTAPAAQPVESSVPLPLPKRKSS 71


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -1

Query: 680 PSTGPTPVHVPAPYPV--EKPVPFAVPS*EASGLPRP 576
           P+  P P+ VP P P+    P P   P    +G P P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 668 PTPVHVPAPYPVEKPVPFAVPS*E 597
           P  V  P P PV +P P A P+ E
Sbjct: 889 PVAVPAPIPAPVAEPAPPAAPAKE 912


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 208 MNISPSTAGPSAKFDPLSFKMYIFFIYVMYAER 110
           + +SPS   P  +F P S +M +   Y + A+R
Sbjct: 24  IEVSPSMLDPVDEFTPSSLQMALICAYQLAAQR 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,597
Number of Sequences: 5004
Number of extensions: 38517
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)