Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_C13
(776 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0040 - 7646525-7647775 31 1.3
05_03_0039 - 7621613-7622695 31 1.3
01_02_0007 + 10132380-10133201 30 1.8
05_01_0545 - 4756266-4757510 29 3.1
12_02_0009 + 12247232-12247380,12249821-12249854,12250861-122510... 29 4.1
04_04_1107 - 30954647-30954769,30955052-30955141,30955309-309556... 29 4.1
01_01_0067 - 528367-529008 29 5.4
07_03_0091 + 13312904-13313647 28 7.2
07_03_0089 - 13300902-13301645 28 7.2
06_01_0881 + 6754600-6754681,6754742-6755284,6755461-6755523,675... 28 7.2
05_07_0327 - 29275916-29276017,29276101-29276283,29276392-292764... 28 7.2
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 28 9.5
05_07_0163 - 28094574-28094726,28095248-28095382,28095771-280959... 28 9.5
04_03_0801 - 19828175-19828770,19828913-19828994 28 9.5
02_04_0221 - 21021886-21022144,21022227-21022345,21022681-210229... 28 9.5
02_02_0096 - 6727844-6727957,6728149-6728247,6728332-6728410,672... 28 9.5
>05_03_0040 - 7646525-7647775
Length = 416
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -1
Query: 680 PSTGPTPVHVPAPYPVEKPVPFAVPS*EASGLPRP 576
P PTP P P P KPVP P E P+P
Sbjct: 64 PHPKPTPKPEPKPEPEPKPVPEPEPKPEPKPEPKP 98
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = -1
Query: 680 PSTGPTPVHVPAPYPVEKPVPFAVPS*EASGLPRP 576
P P P P PYP KP P P E P+P
Sbjct: 126 PEPKPEPKPEPKPYPEPKPEPKPEPKPEPKPEPKP 160
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = -1
Query: 680 PSTGPTPVHVPAPYPVEKPVPFAVPS*EASGLPRP 576
P P P P PYP KP P P E P P
Sbjct: 94 PEPKPEPKPEPKPYPEPKPEPKPEPKPEPEPKPEP 128
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = -1
Query: 680 PSTGPTPVHVPAPYPVEKPVPFAVPS*EASGLPRP 576
P P PV P P P KP P P E P P
Sbjct: 76 PEPEPKPVPEPEPKPEPKPEPKPEPKPEPKPYPEP 110
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = -1
Query: 680 PSTGPTPVHVPAPYPVEKPVPFAVPS*EASGLPRP 576
P P P P PYP KP P P + P P
Sbjct: 226 PKPEPKPKPEPKPYPEPKPKPEPKPEPKPEPKPEP 260
>05_03_0039 - 7621613-7622695
Length = 360
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -1
Query: 680 PSTGPTPVHVPAPYPVEKPVPFAVPS*EASGLPRP 576
P P P H P P P +P P+ P E P+P
Sbjct: 134 PKPEPKPEHKPEPKPEPEPKPYPKPKPEPKPGPKP 168
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = -1
Query: 680 PSTGPTPVHVPAPYPVEKPVPFAVPS*EASGLPRP 576
P P P P P P KPVP P E P+P
Sbjct: 170 PKPEPKPHPEPKPEPKPKPVPHPEPKPEPKPEPKP 204
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -1
Query: 680 PSTGPTPVHVPAPYPVEKPVPFAVPS*EASGLPRP 576
P P P P P P +P P+ P E +P+P
Sbjct: 242 PKPEPEPKPEPKPEPKPEPKPYPKPKPEPKPVPKP 276
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -1
Query: 680 PSTGPTPVHVPAPYPVEKPVPFAVPS*EASGLPRP 576
P P P P PYP KP P VP + +P P
Sbjct: 250 PEPKPEPKPEPKPYPKPKPEPKPVP--KPKPIPHP 282
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -1
Query: 668 PTPVHVPAPYPVEKPVPFAVPS*EASGLPRP 576
P P P PYP KP P P E P+P
Sbjct: 146 PKPEPEPKPYPKPKPEPKPGPKPEPKPEPKP 176
>01_02_0007 + 10132380-10133201
Length = 273
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -1
Query: 680 PSTGPTPVHVPAPYPVEKPVPFAVPS*EASGLPRP 576
P GP P+ P P P P P P+ LP+P
Sbjct: 98 PLPGPQPLPQPGPQPNPNPQPLPQPNPNPQPLPQP 132
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -1
Query: 680 PSTGPTPVHVPAPYPVEKPVPFAVPS*EASGLPRP 576
P+ P P+ P P P +P P P + LP P
Sbjct: 66 PNPQPQPLPQPQPQPQPQPQPLPQPQPQPQPLPLP 100
>05_01_0545 - 4756266-4757510
Length = 414
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/57 (35%), Positives = 22/57 (38%)
Frame = -2
Query: 739 GXRTAALPRCEARRCPRQGARRQALPPCMCLLLTPSRSQCLLLSPVEKPVAYPVHVP 569
G R LP +R PRQ A A PP C L P P AYP +P
Sbjct: 341 GDRRNCLPNRPYQRTPRQCAAFYAAPPVDCAAFQCKPFVPSPLLPPPPPPAYPGPLP 397
>12_02_0009 +
12247232-12247380,12249821-12249854,12250861-12251007,
12251095-12251304,12251452-12251787
Length = 291
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -2
Query: 652 CLLLTPSRSQCLLLSPVEKPV 590
CLL TP RS+CL++S +K V
Sbjct: 41 CLLATPRRSRCLVISKGKKSV 61
>04_04_1107 -
30954647-30954769,30955052-30955141,30955309-30955617,
30955732-30955842,30955945-30956379,30956452-30956610,
30957044-30957994,30959016-30959483
Length = 881
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Frame = -1
Query: 680 PSTGPTP---VHVPAPYPVEKPVPFAVP 606
P GP P +H P P PV+ P P +P
Sbjct: 62 PGRGPPPAAVLHAPVPVPVQVPAPARMP 89
>01_01_0067 - 528367-529008
Length = 213
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 667 LPPCMCLLLTPSRSQCLLLSPVEKPVAYP 581
LPP C L T + LL P+E+ ++YP
Sbjct: 77 LPPPSCPLTTDLAERLALLPPLEQTISYP 105
>07_03_0091 + 13312904-13313647
Length = 247
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = -1
Query: 680 PSTGPTPVHVPAPYPVEKPVPFAVPS*EASGLPRP 576
P P P P P P KP P P E S P+P
Sbjct: 172 PKPNPKPKPQPEPSPNPKPEPKPEPKPEPSPNPKP 206
>07_03_0089 - 13300902-13301645
Length = 247
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = -1
Query: 680 PSTGPTPVHVPAPYPVEKPVPFAVPS*EASGLPRP 576
P P P P P P KP P P E S P+P
Sbjct: 172 PKPNPKPKPQPEPSPNPKPEPKPEPKPEPSPNPKP 206
>06_01_0881 +
6754600-6754681,6754742-6755284,6755461-6755523,
6755653-6755666
Length = 233
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -1
Query: 674 TGPTPVHVPAPYPVEKPVPFAVPS 603
TGP P +PAP P P P PS
Sbjct: 209 TGPVPPLMPAPTPAAAPSPSPEPS 232
>05_07_0327 -
29275916-29276017,29276101-29276283,29276392-29276453,
29276590-29276671,29276922-29276987,29277297-29277359,
29277466-29277570,29277678-29277887,29277988-29278103,
29278875-29279082
Length = 398
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 365 RDWLLDCYGHVPLNSYGVGPVNGHFDGNGDWPVDR 469
+D L+D Y +VP YG+ P N D P DR
Sbjct: 67 KDGLMDNYKNVPQFLYGLSPAQIEMFMNDDNPYDR 101
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -1
Query: 677 STGPTPVHVPAPYPVEKPVPFAVPS 603
STGP PV VPAP PVP VP+
Sbjct: 1305 STGPGPVAVPAPGSA-GPVPPQVPA 1328
>05_07_0163 -
28094574-28094726,28095248-28095382,28095771-28095923,
28096010-28096208,28096312-28096349,28096849-28097020,
28097666-28097788,28097869-28098284
Length = 462
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -3
Query: 612 CPQLRSQWPTPSMFLSTGL-TPCTLRSPWPFP*R 514
C RS P PS S L +P SPWP+P R
Sbjct: 31 CAASRSPSPGPSSSRSLALPSPSASASPWPWPRR 64
>04_03_0801 - 19828175-19828770,19828913-19828994
Length = 225
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -1
Query: 683 CPSTGPTPVHVPAPYPVEKPVPFAVPS*EASGLPRPC 573
C P VP PYPV PVP + A+ P+PC
Sbjct: 117 CNKQPPACKMVPFPYPVPYPVPC---NKTATDKPKPC 150
>02_04_0221 -
21021886-21022144,21022227-21022345,21022681-21022920,
21023064-21023171,21023272-21023331,21023991-21024066,
21024155-21024360,21024722-21024784,21024925-21025012,
21025515-21026015,21027206-21027603
Length = 705
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = -1
Query: 686 RCPSTGPTPVH--VPAPYPVEK--PVPFAVPS*EASGLPRPCSC 567
RCP GP H +P P PV K P+P A P+ A P P +C
Sbjct: 70 RCP--GPQDQHHGLPLPRPVSKSAPMPLASPA-AAPPSPSPPAC 110
>02_02_0096 -
6727844-6727957,6728149-6728247,6728332-6728410,
6728534-6728634,6728740-6728808,6729180-6729220,
6729992-6730836,6730924-6731027,6731479-6732354
Length = 775
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/61 (31%), Positives = 23/61 (37%)
Frame = -2
Query: 739 GXRTAALPRCEARRCPRQGARRQALPPCMCLLLTPSRSQCLLLSPVEKPVAYPVHVPVDR 560
G A P E PRQ R A PP + + + +PV PVA PV
Sbjct: 19 GAAAAGAPSGEHHHRPRQHRRSSAQPPPLPPPPVVAAAAAAEAAPVMAPVAAPVAAAAAE 78
Query: 559 P 557
P
Sbjct: 79 P 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,752,549
Number of Sequences: 37544
Number of extensions: 316653
Number of successful extensions: 1496
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1434
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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