Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_C13
(776 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.34
SB_47039| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_36640| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0) 29 4.2
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 29 5.5
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7
>SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 863
Score = 32.7 bits (71), Expect = 0.34
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -3
Query: 645 SLPRREASAFCCP-QLRSQWPTPSMFLSTGLTPCTLRSPWPFP*RCQCP 502
S P R + + P + + W TPS + + TP +PWP P R P
Sbjct: 625 STPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTPWPTPSRYNTP 673
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -3
Query: 645 SLPRREASAFCCP-QLRSQWPTPSMFLSTGLTPCTLRSPWPFP*RCQCP 502
S P R + + P + + W TPS + + TP +PW P R P
Sbjct: 525 STPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTP 573
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -3
Query: 645 SLPRREASAFCCP-QLRSQWPTPSMFLSTGLTPCTLRSPWPFP*RCQCP 502
S P R + + P + + W TPS + + TP +PW P R P
Sbjct: 535 STPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTP 583
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -3
Query: 645 SLPRREASAFCCP-QLRSQWPTPSMFLSTGLTPCTLRSPWPFP*RCQCP 502
S P R + + P + + W TPS + + TP +PW P R P
Sbjct: 545 STPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTP 593
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -3
Query: 645 SLPRREASAFCCP-QLRSQWPTPSMFLSTGLTPCTLRSPWPFP*RCQCP 502
S P R + + P + + W TPS + + TP +PW P R P
Sbjct: 555 STPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTP 603
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -3
Query: 645 SLPRREASAFCCP-QLRSQWPTPSMFLSTGLTPCTLRSPWPFP*RCQCP 502
S P R + + P + + W TPS + + TP +PW P R P
Sbjct: 565 STPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTP 613
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -3
Query: 645 SLPRREASAFCCP-QLRSQWPTPSMFLSTGLTPCTLRSPWPFP*RCQCP 502
S P R + + P + + W TPS + + TP +PW P R P
Sbjct: 575 STPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTP 623
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -3
Query: 645 SLPRREASAFCCP-QLRSQWPTPSMFLSTGLTPCTLRSPWPFP*RCQCP 502
S P R + + P + + W TPS + + TP +PW P R P
Sbjct: 585 STPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTP 633
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -3
Query: 645 SLPRREASAFCCP-QLRSQWPTPSMFLSTGLTPCTLRSPWPFP*RCQCP 502
S P R + + P + + W TPS + + TP +PW P R P
Sbjct: 595 STPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTP 643
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -3
Query: 645 SLPRREASAFCCP-QLRSQWPTPSMFLSTGLTPCTLRSPWPFP*RCQCP 502
S P R + + P + + W TPS + + TP +PW P R P
Sbjct: 605 STPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTP 653
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = -3
Query: 645 SLPRREASAFCCP-QLRSQWPTPSMFLSTGLTPCTLRSPWPFP*RCQCP 502
S P R + P + + W TPS + + TP +PW P R P
Sbjct: 505 STPSRYNTPLPTPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTP 553
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = -3
Query: 639 PRREASAFCCP-QLRSQWPTPSMFLSTGLTPCTLRSPWPFP*RCQCP 502
P R + + P + + W TPS + + TP +PW P R P
Sbjct: 517 PSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTP 563
>SB_47039| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 384
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 347 GNLHWYRDWLLDCYGHVPLNSYGVGPVNG--HFDGNGDWPV 463
GN H+ ++ YG+V ++ G+ PVNG HF G PV
Sbjct: 342 GNAHFSTCGMMPVYGNVHFSTCGMMPVNGNAHFSTCGMMPV 382
>SB_36640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 668 PTPVHVPAPYPVEKP-VPFAVPS*EASGLPRPCS 570
PTP + P P+P+ +P VP + LPRPC+
Sbjct: 52 PTPCYGPVPHPLLRPCVPPPATALVPHPLPRPCA 85
>SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 1277
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -2
Query: 691 RQGARRQALPPCMCLLLTPSRSQCLLLSPVEKPVAYPVHVPVDRP 557
R+G++R+ + P LL P R+Q L +P PV +H P+ P
Sbjct: 536 RRGSQRKVVSPGKQLLNVPGRTQRKLPTPPSSPVV--IHKPLACP 578
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -1
Query: 683 CPSTGPTPVHVPAPYPVEKPVPFAVPS*EASGLPRPCS 570
C + P P P E P+ F P E S LP+PCS
Sbjct: 1266 CKAGWYCPTGSSVPTPRECPIGFHCP--EGSSLPKPCS 1301
>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -1
Query: 680 PSTGPTPVHVPAPYPVEKPVPFAVPS*EASGLPRPCS 570
P + P+P P+P+P P P P+ + P P S
Sbjct: 469 PISNPSPRPHPSPHPSSNPSPNPSPNPSSDPSPNPSS 505
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,902,523
Number of Sequences: 59808
Number of extensions: 339832
Number of successful extensions: 1003
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -