Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C12
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    79   1e-15
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    27   3.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   7.6  

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 78.6 bits (185), Expect = 1e-15
 Identities = 37/71 (52%), Positives = 52/71 (73%)
 Frame = -1

Query: 731 QSYTEFSLASLLXYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRE 552
           Q   EF+ A+ +  A+ E  CSE SSR  AM+NASK+AG+MI+K ++ +NR RQA IT E
Sbjct: 230 QPLMEFAFANAIFSAMAEAHCSEMSSRRNAMENASKSAGDMINKFSIQYNRQRQASITNE 289

Query: 551 LIEIISGAAAL 519
           LI+I++GA +L
Sbjct: 290 LIDIVTGANSL 300


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +1

Query: 28  TLFLTTTAPTHRSQRAARHMLKPVSFRVSVAGMGAVQCRHRKSY 159
           T F  T AP H S  A +H   PV+       +  +Q  H   +
Sbjct: 399 TPFSPTLAPQHTSSNATKHSAPPVTKSAPFPVVSPLQLNHTPGF 442


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 51   AHTQVTARSPTYVEASLVSRECCRDGSCPV 140
            +H ++ A  P+YV    +S E C++   P+
Sbjct: 3363 SHMRIIADKPSYVTMQTISDEYCKNRGMPL 3392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,444,412
Number of Sequences: 5004
Number of extensions: 41195
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)