Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C12
         (833 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)             111   5e-25
SB_13648| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   9e-10

>SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score =  111 bits (268), Expect = 5e-25
 Identities = 53/69 (76%), Positives = 63/69 (91%)
 Frame = -1

Query: 725 YTEFSLASLLXYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELI 546
           Y EF+LAS+L + +KE +CSE S+RMTAMD A+KNAGEMIDKLTLT+NRTRQAVITREL+
Sbjct: 260 YQEFNLASMLFFGMKEQSCSEHSARMTAMDAATKNAGEMIDKLTLTYNRTRQAVITRELV 319

Query: 545 EIISGAAAL 519
           EIISGAAA+
Sbjct: 320 EIISGAAAV 328


>SB_13648| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 33

 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 29/32 (90%), Positives = 32/32 (100%)
 Frame = -1

Query: 614 EMIDKLTLTFNRTRQAVITRELIEIISGAAAL 519
           EMIDKLTLT+NRTRQAVITREL+EIISGAAA+
Sbjct: 2   EMIDKLTLTYNRTRQAVITRELVEIISGAAAV 33


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,698,401
Number of Sequences: 59808
Number of extensions: 332571
Number of successful extensions: 702
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)