Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_C12
(833 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial... 95 7e-20
At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast... 65 5e-11
At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast... 59 4e-09
At5g17960.1 68418.m02106 DC1 domain-containing protein contains ... 29 2.9
At3g18860.2 68416.m02396 transducin family protein / WD-40 repea... 29 3.8
At3g18860.1 68416.m02395 transducin family protein / WD-40 repea... 29 3.8
At2g42730.1 68415.m05292 F-box family protein contains F-box dom... 28 8.8
At2g34230.1 68415.m04188 hypothetical protein contains Pfam prof... 28 8.8
>At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial
(ATPC) identical to SP|Q96250 ATP synthase gamma chain,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase
Length = 325
Score = 94.7 bits (225), Expect = 7e-20
Identities = 44/72 (61%), Positives = 59/72 (81%)
Frame = -1
Query: 731 QSYTEFSLASLLXYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRE 552
Q+ EF + ++ A+ E ACSE +RM+AMD++S+NAGEM+D+LTLT+NRTRQA IT E
Sbjct: 251 QNLAEFQFSCVMFNAVLENACSEMGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTE 310
Query: 551 LIEIISGAAALD 516
LIEIISGA+AL+
Sbjct: 311 LIEIISGASALE 322
>At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast
(ATPC2) identical to SP|Q01909 ATP synthase gamma chain
2, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase;
similar to ATP synthase gamma-subunit GI:21241 from
[Spinacia oleracea]
Length = 386
Score = 65.3 bits (152), Expect = 5e-11
Identities = 34/64 (53%), Positives = 44/64 (68%)
Frame = -1
Query: 710 LASLLXYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELIEIISG 531
L S + AL+E SE +SRM AM NA+ NA E+ LT+ +NR RQA IT EL+EI++G
Sbjct: 320 LNSQILRALQESLASELASRMNAMSNATDNAVELKKNLTMAYNRARQAKITGELLEIVAG 379
Query: 530 AAAL 519
A AL
Sbjct: 380 AEAL 383
>At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast
(ATPC1) identical to SP|Q01908 ATP synthase gamma chain
1, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}
Length = 373
Score = 58.8 bits (136), Expect = 4e-09
Identities = 29/63 (46%), Positives = 44/63 (69%)
Frame = -1
Query: 710 LASLLXYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELIEIISG 531
L S + AL+E SE ++RM+AM +AS NA ++ L++ +NR RQA IT E++EI++G
Sbjct: 309 LNSQILRALQESLASELAARMSAMSSASDNASDLKKSLSMVYNRKRQAKITGEILEIVAG 368
Query: 530 AAA 522
A A
Sbjct: 369 ANA 371
>At5g17960.1 68418.m02106 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 599
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 247 WCGYYLK*QGTTATHPHFHIYFRCLLKLVCTIC 149
WCG Y+ T ++HP +++RC +C C
Sbjct: 130 WCGKYIP---TPSSHPRMTVFYRC---SICNFC 156
>At3g18860.2 68416.m02396 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +3
Query: 543 LDELPGDDSLTGPVEREGQ 599
LDELPG DSLT P +GQ
Sbjct: 329 LDELPGLDSLTSPGTSDGQ 347
>At3g18860.1 68416.m02395 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +3
Query: 543 LDELPGDDSLTGPVEREGQ 599
LDELPG DSLT P +GQ
Sbjct: 329 LDELPGLDSLTSPGTSDGQ 347
>At2g42730.1 68415.m05292 F-box family protein contains F-box domain
Pfam:PF00646
Length = 737
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +3
Query: 27 HFISNHHCAHTQVTARSPTYVEASLVSRECCRDGSCPVSASQIVQTNLRRQRK 185
+F+ H+ T ++ R P E + R C D +C VS+ + + ++R RK
Sbjct: 174 NFVGGHNVVGTLIS-RCPVLEELVVEERRCV-DWTCSVSSPSLKRLHIRFDRK 224
>At2g34230.1 68415.m04188 hypothetical protein contains Pfam
profiles PF04780: Protein of unknown function (DUF629),
PF04781: Protein of unknown function (DUF627)
Length = 716
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = +3
Query: 27 HFISNHHCAHTQVTARSPTYVEASLVSRECCRDGSCPV---SASQIVQTNLRRQRK*IWK 197
H + H + + P YV+ L CC D PV A+ ++ ++ Q++ ++
Sbjct: 266 HILDKHVHKYEPEFSDRPKYVDEILADMICCGDWK-PVDIAQAANLINDRIKSQKEFVYV 324
Query: 198 *GWVAVVP 221
GW + P
Sbjct: 325 NGWCSDWP 332
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,968,935
Number of Sequences: 28952
Number of extensions: 224709
Number of successful extensions: 576
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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