Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_C11
(808 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 73 5e-14
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 71 2e-13
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 69 6e-13
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 69 8e-13
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 67 2e-12
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 67 2e-12
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 66 7e-12
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 65 1e-11
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 65 1e-11
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 65 1e-11
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 64 2e-11
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 64 2e-11
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 63 4e-11
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 63 4e-11
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 63 5e-11
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 61 2e-10
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 60 3e-10
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 60 5e-10
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 58 1e-09
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 58 1e-09
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 56 4e-09
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 55 1e-08
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 45 1e-05
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 35 0.016
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 34 0.021
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 33 0.048
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ... 30 0.44
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18... 28 1.4
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 27 2.4
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 5.5
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 26 5.5
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac... 26 7.2
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 26 7.2
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 72.9 bits (171), Expect = 5e-14
Identities = 33/76 (43%), Positives = 48/76 (63%)
Frame = -1
Query: 676 LXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIG 497
+ G+ KER ++ F+ + LICTD+ ARGID+ + +IN LP + NY+HRIG
Sbjct: 290 MHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIG 349
Query: 496 RVGRAERMGLAISLVS 449
R GR R G+AI+ V+
Sbjct: 350 RSGRFGRKGVAINFVT 365
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 70.9 bits (166), Expect = 2e-13
Identities = 31/73 (42%), Positives = 48/73 (65%)
Frame = -1
Query: 676 LXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIG 497
+ GDR +ER+ LE+F++ + ++ T VA+RG+DI + +IN LP + +YVHRIG
Sbjct: 460 IHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIG 519
Query: 496 RVGRAERMGLAIS 458
R GRA G A++
Sbjct: 520 RTGRAGNTGQAVA 532
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 69.3 bits (162), Expect = 6e-13
Identities = 38/97 (39%), Positives = 53/97 (54%)
Frame = -1
Query: 706 TFGNELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPD 527
T + + V + GD R L FK+ + L+ TDVAARG+DI + +IN+T P
Sbjct: 436 TLARKYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPL 495
Query: 526 EKSNYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGE 416
+YVHRIGR GRA G AI+ + P+ + GE
Sbjct: 496 TIEDYVHRIGRTGRANTKGTAITFFT--PQDKSHAGE 530
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 68.9 bits (161), Expect = 8e-13
Identities = 33/82 (40%), Positives = 50/82 (60%)
Frame = -1
Query: 694 ELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSN 515
EL L + +ER ++L F+ K L+ TDVA+RG+DI + +IN LP + +
Sbjct: 282 ELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDD 341
Query: 514 YVHRIGRVGRAERMGLAISLVS 449
Y+HR+GR RA R G +IS+V+
Sbjct: 342 YIHRVGRTARAGRSGESISIVT 363
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 67.3 bits (157), Expect = 2e-12
Identities = 34/87 (39%), Positives = 49/87 (56%)
Frame = -1
Query: 691 LSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNY 512
L+ + G ++R LE F++ + +L+ TDVA+RGIDI G+ +IN P Y
Sbjct: 529 LNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVY 588
Query: 511 VHRIGRVGRAERMGLAISLVSTVPEKV 431
+HR+GR RA R G AI+L KV
Sbjct: 589 LHRVGRTARAGRSGRAITLAGEGDRKV 615
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 67.3 bits (157), Expect = 2e-12
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Frame = -1
Query: 727 NLERYFKTFGNELSC-----VCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDIS 563
NL+R + +L+ V L G + ++R+ +E +N L+ TD+A RGIDI
Sbjct: 524 NLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIP 583
Query: 562 GLPFMINITLPDEKSNYVHRIGRVGRAERMGLAISLVSTVPEKVWY 425
+ ++N + +Y HRIGR GRA + G AI+ + V+Y
Sbjct: 584 NVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPEDTDVYY 629
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 65.7 bits (153), Expect = 7e-12
Identities = 30/79 (37%), Positives = 45/79 (56%)
Frame = -1
Query: 682 VCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHR 503
+C+ G +ER + FK+ + + TDV RGIDI + +IN +PD +Y+HR
Sbjct: 323 ICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHR 382
Query: 502 IGRVGRAERMGLAISLVST 446
+GR GR GLAI+ S+
Sbjct: 383 VGRAGRFGTKGLAITFSSS 401
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 65.3 bits (152), Expect = 1e-11
Identities = 36/96 (37%), Positives = 50/96 (52%)
Frame = -1
Query: 736 DCDNLERYFKTFGNELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGL 557
D L +T G S + L G R L FK+ L+ TDVAARG+DI +
Sbjct: 297 DTQRLAILLRTLG--FSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIPLV 354
Query: 556 PFMINITLPDEKSNYVHRIGRVGRAERMGLAISLVS 449
+IN +P + Y+HR+GR RA R G +I+LV+
Sbjct: 355 DVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVT 390
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 65.3 bits (152), Expect = 1e-11
Identities = 30/76 (39%), Positives = 45/76 (59%)
Frame = -1
Query: 676 LXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIG 497
+ GD +R + F+ + LI TD+ ARGID+ + +IN LP + NY+HRIG
Sbjct: 288 MHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIG 347
Query: 496 RVGRAERMGLAISLVS 449
R GR R G++I+ V+
Sbjct: 348 RGGRFGRKGVSINFVT 363
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 64.9 bits (151), Expect = 1e-11
Identities = 32/89 (35%), Positives = 48/89 (53%)
Frame = -1
Query: 730 DNLERYFKTFGNELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPF 551
D++ R+ + G + + GD+ ER L F+ + ++ TDVA+RGID+ G+
Sbjct: 383 DDITRFLRQDG--WPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITH 440
Query: 550 MINITLPDEKSNYVHRIGRVGRAERMGLA 464
+ N P +YVHRIGR GRA G A
Sbjct: 441 VFNYDFPGNTEDYVHRIGRTGRAGAKGTA 469
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 64.5 bits (150), Expect = 2e-11
Identities = 30/86 (34%), Positives = 48/86 (55%)
Frame = -1
Query: 715 YFKTFGNELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINIT 536
Y + +E+ + G+ +R++ L F+ ++ LI TD+ ARGID G+ +IN
Sbjct: 305 YTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFD 364
Query: 535 LPDEKSNYVHRIGRVGRAERMGLAIS 458
P +Y+HRIGR GRA G A++
Sbjct: 365 FPQSVHSYIHRIGRTGRAGNTGQAVT 390
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 64.1 bits (149), Expect = 2e-11
Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Frame = -1
Query: 712 FKTFGNELSCVCLXGDRKPKERKDNLEIFKNSQVK-FLICTDVAARGIDISGLPFMINIT 536
F T+ V L G + R N E FK S K L TD+A+RG+DI + F++ +
Sbjct: 276 FLTYKLPFEIVALHGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLD 335
Query: 535 LPDEKSNYVHRIGRVGRAERMGLAISLVS 449
P + ++ HR GR GRA R G+AI L++
Sbjct: 336 PPLDPKSFSHRCGRAGRAGRAGVAIVLLN 364
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 63.3 bits (147), Expect = 4e-11
Identities = 27/81 (33%), Positives = 44/81 (54%)
Frame = -1
Query: 676 LXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIG 497
+ G + +R + +K LI T V ARG+D+ L ++N P+ +YVHR+G
Sbjct: 698 IHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVG 757
Query: 496 RVGRAERMGLAISLVSTVPEK 434
R GRA G+A++ ++ EK
Sbjct: 758 RTGRAGHTGVAVTFITPEQEK 778
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 63.3 bits (147), Expect = 4e-11
Identities = 31/65 (47%), Positives = 41/65 (63%)
Frame = -1
Query: 655 KERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIGRVGRAER 476
K+R +LE FKN+ L+CTDVAARGIDI + +I+ +P YVHR GR RA
Sbjct: 426 KKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRSGRTARANE 485
Query: 475 MGLAI 461
G++I
Sbjct: 486 DGVSI 490
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 62.9 bits (146), Expect = 5e-11
Identities = 33/93 (35%), Positives = 46/93 (49%)
Frame = -1
Query: 724 LERYFKTFGNELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMI 545
LE ++ SC ERK + F + L+C+D+ ARGID++ +I
Sbjct: 451 LELIHESLNQSFSCGLFTSSLSRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVI 510
Query: 544 NITLPDEKSNYVHRIGRVGRAERMGLAISLVST 446
N P +YVHRIGR RA R G A +LV +
Sbjct: 511 NYDPPLSVRSYVHRIGRTARAGREGFAWTLVQS 543
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 61.3 bits (142), Expect = 2e-10
Identities = 29/90 (32%), Positives = 52/90 (57%)
Frame = -1
Query: 694 ELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSN 515
+L + L G +K + R + F N++ L+CT+VAARG+DI + +++ PD+ +
Sbjct: 360 DLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRD 419
Query: 514 YVHRIGRVGRAERMGLAISLVSTVPEKVWY 425
Y+HR+GR R + G SL+ P ++ +
Sbjct: 420 YIHRVGRTARGTK-GTGKSLMFLAPSELGF 448
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 60.5 bits (140), Expect = 3e-10
Identities = 27/60 (45%), Positives = 36/60 (60%)
Frame = -1
Query: 628 FKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIGRVGRAERMGLAISLVS 449
F+N + L+C+D+ RGIDI + +IN P Y+HRIGR GR GLAIS +S
Sbjct: 327 FRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFIS 386
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 59.7 bits (138), Expect = 5e-10
Identities = 28/87 (32%), Positives = 47/87 (54%)
Frame = -1
Query: 712 FKTFGNELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITL 533
F+ +S + L G +K R + F +S+ L CTD+ ARG+D + ++I +
Sbjct: 303 FRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDA 362
Query: 532 PDEKSNYVHRIGRVGRAERMGLAISLV 452
P++ Y+HR+GR R R G A+ L+
Sbjct: 363 PEDVDTYIHRVGRTARYNRSGNALLLL 389
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 58.4 bits (135), Expect = 1e-09
Identities = 28/77 (36%), Positives = 40/77 (51%)
Frame = -1
Query: 694 ELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSN 515
++ C L +R+ E F+ Q L TDV ARG+D + ++ IT P +
Sbjct: 317 KIPCFILHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDD 376
Query: 514 YVHRIGRVGRAERMGLA 464
Y+HRIGR GRA + G A
Sbjct: 377 YIHRIGRTGRAGKTGEA 393
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 58.4 bits (135), Expect = 1e-09
Identities = 30/75 (40%), Positives = 42/75 (56%)
Frame = -1
Query: 676 LXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIG 497
+ G + R + + F+ + L+ TDVA+RGIDI L +IN P + +VHR+G
Sbjct: 376 IYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVG 435
Query: 496 RVGRAERMGLAISLV 452
R RA R G A SLV
Sbjct: 436 RTARAGRTGWAYSLV 450
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 56.4 bits (130), Expect = 4e-09
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Frame = -1
Query: 679 CLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLP------DEKS 518
CL G+ + +R ++ F+ K L+ T+V ARGID+S + ++N +P +
Sbjct: 381 CLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQ 440
Query: 517 NYVHRIGRVGRAERMGLAISLV 452
Y+HRIGR GR R+G++I+ V
Sbjct: 441 TYLHRIGRTGRFGRVGVSINFV 462
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 54.8 bits (126), Expect = 1e-08
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = -1
Query: 676 LXGDRKPKERKDNLEIFKNSQVK---FLICTDVAARGIDISGLPFMINITLPDEKSNYVH 506
L G + R L +F +S+ L+CTDVAARG+D+ + ++ P +Y+H
Sbjct: 473 LHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLH 532
Query: 505 RIGRVGRAERMGLAI 461
RIGR RA G AI
Sbjct: 533 RIGRTARAGHNGAAI 547
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 44.8 bits (101), Expect = 1e-05
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = -1
Query: 583 ARGIDISGLPFMINITLPDEKSNYVHRIGRVGRAERMGLAISLV 452
ARG+D + ++N +P +Y+HRIGR RA + G A+S V
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFV 430
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 34.7 bits (76), Expect = 0.016
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -1
Query: 655 KERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIGR 494
+ +KD L FK + LI T VA GID+ +I + + YV GR
Sbjct: 410 RRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGR 463
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 34.3 bits (75), Expect = 0.021
Identities = 15/75 (20%), Positives = 32/75 (42%)
Frame = -1
Query: 652 ERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIGRVGRAERM 473
++K+ ++ F+ + L+ T + G+DI +I + R+GR GR +
Sbjct: 519 QQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRTIQRMGRTGRKKSG 578
Query: 472 GLAISLVSTVPEKVW 428
+ + L + W
Sbjct: 579 KVFVLLTEDCEDSKW 593
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 33.1 bits (72), Expect = 0.048
Identities = 18/76 (23%), Positives = 33/76 (43%)
Frame = -1
Query: 655 KERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIGRVGRAER 476
K + + ++ F+ +V LI T + G+DI + +I + R+GR GR +
Sbjct: 479 KLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASASPIRMLQRMGRTGRKRK 538
Query: 475 MGLAISLVSTVPEKVW 428
+ + L E W
Sbjct: 539 GYIYMLLTRGKEEAKW 554
>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 170
Score = 29.9 bits (64), Expect = 0.44
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 415 WCSSRGRNCWNTNLIDDKPKGCCMWYN 335
WCS+ G C +L K G C WYN
Sbjct: 90 WCSN-GEECLYLHLDPSKQVGVCAWYN 115
>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
S18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 615 WLFLNISKLSLRSFGFRSPXRHTQDSSLPNVLK 713
+L LN++K+ LR F +SP R+ L ++L+
Sbjct: 45 YLMLNLTKVGLRRFWSQSPRRNAPKKELSSLLE 77
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 271 DMKVPSNEFDGKVVYGEKRKQAGSGYQD 188
+++ P D KV + EKRK++ GY D
Sbjct: 220 EVQEPVTNVDAKVFHPEKRKRSREGYAD 247
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 26.2 bits (55), Expect = 5.5
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = +2
Query: 455 ETDGQAHAFRATDAPDAMYVVGLFVGKRYVDHERQARDVDAASSDVGANQKLHLAVLEYL 634
+ D H + A+++ + V H DVD + D N LHLA +
Sbjct: 42 QVDNLLHNKSKDECTHALFISIQCANVQMVKHILSVFDVDVNAYDKNKNTPLHLAAMAGR 101
Query: 635 Q-IVFALL 655
Q IV ALL
Sbjct: 102 QDIVEALL 109
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -1
Query: 730 DNLERYFKTFGNELSCVCLXGDRKPKERKDNLEIFKN 620
D+L YF+ FG L C + + R FKN
Sbjct: 177 DSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKN 213
>SPAC823.07 |||GPI-phospholipase A2 activity regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 25.8 bits (54), Expect = 7.2
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = -2
Query: 531 PTKSPTTYIA-SGASVARNAWAWPSV---SSPPYPKRYGIMASGVHLADGTAGTLI 376
P + P + S A V NAW W SV P ++ ++G + G+ TLI
Sbjct: 132 PDEHPAKRLCLSWAIVGMNAWVWSSVFHIRDTPITEKLDYFSAGAFVLFGSYCTLI 187
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 652 ERKDNLEIFKNSQVKFLICTDVAARGID 569
+RK + E+F N++V+ LI T A G++
Sbjct: 1434 DRKISEELFVNNKVQILIATSTLAWGVN 1461
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,174,988
Number of Sequences: 5004
Number of extensions: 65823
Number of successful extensions: 205
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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