Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C11
         (808 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       67   2e-13
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   1.1  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   1.1  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   2.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   4.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   7.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   7.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 67.3 bits (157), Expect = 2e-13
 Identities = 33/80 (41%), Positives = 45/80 (56%)
 Frame = -1

Query: 697 NELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKS 518
           N      + GDR  ++R++ L  FK+ ++  L+ T VAARG+DI  +  +IN  LP    
Sbjct: 474 NNYPTTSIHGDRLQRQREEALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGID 533

Query: 517 NYVHRIGRVGRAERMGLAIS 458
            YVHRIGR GR    G A S
Sbjct: 534 EYVHRIGRTGRVGNRGRATS 553


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +3

Query: 558 RPEMSMPRAATSVQIKNF----TWLFLNISKLSLRSFGFRSPXRHTQDSS 695
           +P MS+       Q +++    TWL L+ S +S+ S G +SP     D++
Sbjct: 6   KPMMSVTAIIQGTQAQHWSRGNTWLSLDNSNMSMSSVGPQSPLDMKPDTA 55


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +3

Query: 558 RPEMSMPRAATSVQIKNF----TWLFLNISKLSLRSFGFRSPXRHTQDSS 695
           +P MS+       Q +++    TWL L+ S +S+ S G +SP     D++
Sbjct: 6   KPMMSVTAIIQGTQAQHWSRGNTWLSLDNSNMSMSSVGPQSPLDMKPDTA 55


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/17 (58%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
 Frame = +1

Query: 472 PCVP-RDRRARCDVRSW 519
           P +P R RR  CDV SW
Sbjct: 53  PLLPLRHRRVTCDVLSW 69


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -1

Query: 592 DVAARGIDISGLPFMINITLPDEKSNYVHRIGRVGRAERMGLAISLVSTVPEKVWYHG-E 416
           ++  +GID   + F  +IT     +  + ++ R   AER+G     +S + +  W+ G  
Sbjct: 575 NIILKGID--AIEFPRSITR--NATALIKKLCRDNPAERLGYQKGGISEIQKHKWFDGFN 630

Query: 415 WCSSRGR 395
           W   R R
Sbjct: 631 WEGLRAR 637


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 387 QQFRPRDEHHSP*YHTFSGTVETRLMARPMRSARP 491
           +Q   R + H P  H+  GT+E  +  R    A P
Sbjct: 347 KQTEVRFKVHDPKAHSKGGTLENTINGRADEEAAP 381


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 387 QQFRPRDEHHSP*YHTFSGTVETRLMARPMRSARP 491
           +Q   R + H P  H+  GT+E  +  R    A P
Sbjct: 347 KQTEVRFKVHDPKAHSKGGTLENTINGRADEEAAP 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,046
Number of Sequences: 438
Number of extensions: 4384
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)