Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_C11
(808 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 79 3e-15
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 77 2e-14
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 77 2e-14
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 76 2e-14
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 76 3e-14
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 75 7e-14
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 74 1e-13
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 74 1e-13
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 72 4e-13
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 70 2e-12
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 70 2e-12
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 69 3e-12
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 69 5e-12
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 69 5e-12
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 69 5e-12
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 69 5e-12
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 68 8e-12
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 68 8e-12
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 68 8e-12
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 68 8e-12
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 67 1e-11
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 67 1e-11
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 67 1e-11
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 67 1e-11
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 67 1e-11
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 66 2e-11
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 66 3e-11
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 66 3e-11
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 66 3e-11
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 65 5e-11
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 65 5e-11
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 65 6e-11
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 64 8e-11
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 63 2e-10
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 63 2e-10
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 63 2e-10
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 62 3e-10
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 62 3e-10
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 61 7e-10
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 61 1e-09
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 60 1e-09
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 60 2e-09
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 60 2e-09
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 57 1e-08
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 56 3e-08
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 56 4e-08
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 55 5e-08
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 54 8e-08
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 54 1e-07
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 54 1e-07
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 53 2e-07
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 52 3e-07
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 52 3e-07
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 52 5e-07
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 52 6e-07
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 52 6e-07
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 52 6e-07
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 50 2e-06
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 50 2e-06
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 49 3e-06
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 49 3e-06
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 47 1e-05
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 45 7e-05
At1g12700.1 68414.m01473 helicase domain-containing protein / pe... 42 5e-04
At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative simila... 39 0.003
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 39 0.004
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 36 0.024
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 36 0.032
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 32 0.52
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 31 0.90
At1g51490.1 68414.m05795 glycosyl hydrolase family 1 protein con... 29 2.7
At1g02020.2 68414.m00122 nitroreductase family protein contains ... 29 3.6
At1g02020.1 68414.m00121 nitroreductase family protein contains ... 29 3.6
At5g66440.1 68418.m08379 expressed protein 29 4.8
At5g60440.1 68418.m07581 MADS-box protein (AGL62) contains Pfal ... 29 4.8
At2g31725.1 68415.m03872 expressed protein 29 4.8
At4g00450.1 68417.m00062 expressed protein 28 6.3
At3g01680.1 68416.m00099 expressed protein 28 8.4
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 79.0 bits (186), Expect = 3e-15
Identities = 37/76 (48%), Positives = 51/76 (67%)
Frame = -1
Query: 676 LXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIG 497
L G+ +R D+LE+F+ +V FLI TDVAARG+DI G+ +IN P E +YVHR+G
Sbjct: 442 LHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVG 501
Query: 496 RVGRAERMGLAISLVS 449
R RA R G A++ V+
Sbjct: 502 RTARAGREGYAVTFVT 517
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 76.6 bits (180), Expect = 2e-14
Identities = 35/78 (44%), Positives = 49/78 (62%)
Frame = -1
Query: 697 NELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKS 518
NE + GDR +ER+ L FK + L+ TDVAARG+DI + ++N LP++
Sbjct: 431 NEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDID 490
Query: 517 NYVHRIGRVGRAERMGLA 464
+YVHRIGR GRA + G+A
Sbjct: 491 DYVHRIGRTGRAGKSGIA 508
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 76.6 bits (180), Expect = 2e-14
Identities = 35/78 (44%), Positives = 49/78 (62%)
Frame = -1
Query: 697 NELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKS 518
NE + GDR +ER+ L FK + L+ TDVAARG+DI + ++N LP++
Sbjct: 431 NEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDID 490
Query: 517 NYVHRIGRVGRAERMGLA 464
+YVHRIGR GRA + G+A
Sbjct: 491 DYVHRIGRTGRAGKSGIA 508
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 76.2 bits (179), Expect = 2e-14
Identities = 38/89 (42%), Positives = 55/89 (61%)
Frame = -1
Query: 730 DNLERYFKTFGNELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPF 551
D+LE + N + GDR +ER+ L+ FK+ + L+ TDVAARG+DI +
Sbjct: 432 DSLENWLCI--NGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAH 489
Query: 550 MINITLPDEKSNYVHRIGRVGRAERMGLA 464
++N LP++ +YVHRIGR GRA + GLA
Sbjct: 490 VVNFDLPNDIDDYVHRIGRTGRAGKSGLA 518
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 75.8 bits (178), Expect = 3e-14
Identities = 36/95 (37%), Positives = 52/95 (54%)
Frame = -1
Query: 733 CDNLERYFKTFGNELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLP 554
CD L Y + C+ L G + +R+ + FKN LI T VAARG+D+ L
Sbjct: 789 CDAL--YRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELE 846
Query: 553 FMINITLPDEKSNYVHRIGRVGRAERMGLAISLVS 449
++N P+ +YVHR+GR GRA R G A++ +S
Sbjct: 847 LVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFIS 881
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 74.5 bits (175), Expect = 7e-14
Identities = 38/89 (42%), Positives = 52/89 (58%)
Frame = -1
Query: 730 DNLERYFKTFGNELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPF 551
D+LE + N + GDR +ER+ L FK + L+ TDVAARG+DI +
Sbjct: 419 DSLENWLCI--NGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAH 476
Query: 550 MINITLPDEKSNYVHRIGRVGRAERMGLA 464
++N LP++ +YVHRIGR GRA GLA
Sbjct: 477 VVNFDLPNDIDDYVHRIGRTGRAGNSGLA 505
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 74.1 bits (174), Expect = 1e-13
Identities = 37/91 (40%), Positives = 53/91 (58%)
Frame = -1
Query: 736 DCDNLERYFKTFGNELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGL 557
+ + LER+ + G V + G++ ER +L +FK L+ TDVAARG+DI +
Sbjct: 378 EAERLERFLQQRG--WKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDV 435
Query: 556 PFMINITLPDEKSNYVHRIGRVGRAERMGLA 464
+IN T P +YVHRIGR GRA + G+A
Sbjct: 436 EVVINYTFPLTTEDYVHRIGRTGRAGKKGVA 466
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 73.7 bits (173), Expect = 1e-13
Identities = 38/91 (41%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Frame = -1
Query: 733 CDNLERYF-KTFGNELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGL 557
CD L R +TFG + GD+ ER D L F++ + L+ TDVAARG+D+ +
Sbjct: 487 CDQLARNLTRTFG----AAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDI 542
Query: 556 PFMINITLPDEKSNYVHRIGRVGRAERMGLA 464
++N P+ +YVHRIGR GRA GLA
Sbjct: 543 RVVVNYDFPNGVEDYVHRIGRTGRAGATGLA 573
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 72.1 bits (169), Expect = 4e-13
Identities = 34/84 (40%), Positives = 48/84 (57%)
Frame = -1
Query: 676 LXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIG 497
+ G +R L FK + L+CTDVA+RG+DI + +IN +P +Y+HR+G
Sbjct: 290 ISGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVG 349
Query: 496 RVGRAERMGLAISLVSTVPEKVWY 425
R RA R G+ ISLV+ E WY
Sbjct: 350 RTARAGRSGVGISLVNQY-ELEWY 372
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 70.1 bits (164), Expect = 2e-12
Identities = 32/77 (41%), Positives = 50/77 (64%)
Frame = -1
Query: 676 LXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIG 497
+ GD++ KER D + F++ + + LI +DV ARGID+ + +IN +P+ Y+HRIG
Sbjct: 291 MHGDKRQKERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIG 350
Query: 496 RVGRAERMGLAISLVST 446
R GR R G+AI+ V +
Sbjct: 351 RAGRFGREGVAINFVKS 367
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/96 (34%), Positives = 54/96 (56%)
Frame = -1
Query: 736 DCDNLERYFKTFGNELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGL 557
D D++ Y G E V + G + ++R + +FK + L+ TDVA++G+D +
Sbjct: 360 DVDDIHEYLLLKGVE--AVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDI 417
Query: 556 PFMINITLPDEKSNYVHRIGRVGRAERMGLAISLVS 449
+IN +P E NYVHRIGR GR + G+A + ++
Sbjct: 418 QHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFIN 453
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 69.3 bits (162), Expect = 3e-12
Identities = 38/92 (41%), Positives = 51/92 (55%)
Frame = -1
Query: 733 CDNLERYFKTFGNELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLP 554
CD+L R + G V + GD+ ER L F++ + LI TDVAARG+DI +
Sbjct: 693 CDHLAR---SVGRHFGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIR 749
Query: 553 FMINITLPDEKSNYVHRIGRVGRAERMGLAIS 458
+IN P +YVHRIGR GRA G+A +
Sbjct: 750 VVINYDFPTGVEDYVHRIGRTGRAGATGVAFT 781
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 68.5 bits (160), Expect = 5e-12
Identities = 33/96 (34%), Positives = 54/96 (56%)
Frame = -1
Query: 736 DCDNLERYFKTFGNELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGL 557
D D++ Y G E V + G + ++R+ + FK + L+ TDVA++G+D +
Sbjct: 409 DVDDIHEYLLLKGVE--AVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDI 466
Query: 556 PFMINITLPDEKSNYVHRIGRVGRAERMGLAISLVS 449
+IN +P E NYVHRIGR GR + G+A + ++
Sbjct: 467 QHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 502
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 68.5 bits (160), Expect = 5e-12
Identities = 34/82 (41%), Positives = 49/82 (59%)
Frame = -1
Query: 676 LXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIG 497
+ GD KER + F++ + LI TDV ARGID+ + +IN LP+ + Y+HRIG
Sbjct: 304 MHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIG 363
Query: 496 RVGRAERMGLAISLVSTVPEKV 431
R GR R G+AI+ V + K+
Sbjct: 364 RSGRFGRKGVAINFVKSDDIKI 385
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 68.5 bits (160), Expect = 5e-12
Identities = 35/104 (33%), Positives = 58/104 (55%)
Frame = -1
Query: 736 DCDNLERYFKTFGNELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGL 557
+CD++ + G ++ L G + ++R+ +LE F+ + L+ TDV RGIDI +
Sbjct: 588 NCDSIAKNLDKAGYRVTT--LHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDV 645
Query: 556 PFMINITLPDEKSNYVHRIGRVGRAERMGLAISLVSTVPEKVWY 425
+IN +P Y HRIGR GRA + G+A S ++ +V+Y
Sbjct: 646 AHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEVFY 689
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 68.5 bits (160), Expect = 5e-12
Identities = 35/95 (36%), Positives = 55/95 (57%)
Frame = -1
Query: 649 RKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIGRVGRAERMG 470
R L FK+ +V L+ TDVA+RG+DI + +IN +P + +YVHR+GR RA R G
Sbjct: 341 RLSALSKFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGG 400
Query: 469 LAISLVSTVPEKVWYHGEWCSSRGRNCWNTNLIDD 365
LA+S+++ K+ + E + +N +I D
Sbjct: 401 LAVSIITETDVKLIHKIEEEVGKKMEPYNKKVITD 435
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 67.7 bits (158), Expect = 8e-12
Identities = 32/91 (35%), Positives = 47/91 (51%)
Frame = -1
Query: 721 ERYFKTFGNELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMIN 542
+R C L GD +R+ L F++ L+ TDVAARG+D+ + +I+
Sbjct: 363 DRLSYALARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIH 422
Query: 541 ITLPDEKSNYVHRIGRVGRAERMGLAISLVS 449
LP+ +VHR GR GRA + G AI + S
Sbjct: 423 YELPNNTETFVHRTGRTGRAGKKGSAILIYS 453
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 67.7 bits (158), Expect = 8e-12
Identities = 33/92 (35%), Positives = 49/92 (53%)
Frame = -1
Query: 733 CDNLERYFKTFGNELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLP 554
CD L R + + GD+ ER + L F++ + L+ TDVAARG+D+ +
Sbjct: 416 CDQLTR---NLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIR 472
Query: 553 FMINITLPDEKSNYVHRIGRVGRAERMGLAIS 458
++N P+ +YVHRIGR GRA G A +
Sbjct: 473 AVVNYDFPNGVEDYVHRIGRTGRAGATGQAFT 504
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 67.7 bits (158), Expect = 8e-12
Identities = 33/92 (35%), Positives = 49/92 (53%)
Frame = -1
Query: 733 CDNLERYFKTFGNELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLP 554
CD L R + + GD+ ER + L F++ + L+ TDVAARG+D+ +
Sbjct: 416 CDQLTR---NLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIR 472
Query: 553 FMINITLPDEKSNYVHRIGRVGRAERMGLAIS 458
++N P+ +YVHRIGR GRA G A +
Sbjct: 473 AVVNYDFPNGVEDYVHRIGRTGRAGATGQAFT 504
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 67.7 bits (158), Expect = 8e-12
Identities = 33/92 (35%), Positives = 49/92 (53%)
Frame = -1
Query: 733 CDNLERYFKTFGNELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLP 554
CD L R + + GD+ ER + L F++ + L+ TDVAARG+D+ +
Sbjct: 416 CDQLTR---NLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIR 472
Query: 553 FMINITLPDEKSNYVHRIGRVGRAERMGLAIS 458
++N P+ +YVHRIGR GRA G A +
Sbjct: 473 AVVNYDFPNGVEDYVHRIGRTGRAGATGQAFT 504
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 67.3 bits (157), Expect = 1e-11
Identities = 29/82 (35%), Positives = 45/82 (54%)
Frame = -1
Query: 682 VCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHR 503
+C+ +ER + FK + L+ TD+ RGIDI + +IN +PD Y+HR
Sbjct: 316 ICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHR 375
Query: 502 IGRVGRAERMGLAISLVSTVPE 437
+GR GR GLAI+ V++ +
Sbjct: 376 VGRAGRFGTKGLAITFVASASD 397
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 67.3 bits (157), Expect = 1e-11
Identities = 29/82 (35%), Positives = 45/82 (54%)
Frame = -1
Query: 682 VCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHR 503
+C+ +ER + FK + L+ TD+ RGIDI + +IN +PD Y+HR
Sbjct: 233 ICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHR 292
Query: 502 IGRVGRAERMGLAISLVSTVPE 437
+GR GR GLAI+ V++ +
Sbjct: 293 VGRAGRFGTKGLAITFVASASD 314
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 67.3 bits (157), Expect = 1e-11
Identities = 29/82 (35%), Positives = 45/82 (54%)
Frame = -1
Query: 682 VCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHR 503
+C+ +ER + FK + L+ TD+ RGIDI + +IN +PD Y+HR
Sbjct: 316 ICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHR 375
Query: 502 IGRVGRAERMGLAISLVSTVPE 437
+GR GR GLAI+ V++ +
Sbjct: 376 VGRAGRFGTKGLAITFVASASD 397
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 67.3 bits (157), Expect = 1e-11
Identities = 33/73 (45%), Positives = 45/73 (61%)
Frame = -1
Query: 676 LXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIG 497
+ D P ER++ ++ F+ + LI TDV ARG+D G+ +IN PD S Y+HRIG
Sbjct: 410 IHSDLPPGERENAVDQFRAGEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIG 469
Query: 496 RVGRAERMGLAIS 458
R GRA R G AI+
Sbjct: 470 RSGRAGRSGEAIT 482
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 67.3 bits (157), Expect = 1e-11
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Frame = -1
Query: 697 NELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKS 518
N L GD+ R + L+ FK+ LI TDVAARG+DI L ++N + +
Sbjct: 496 NSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMD 555
Query: 517 NYVHRIGRVGRA-ERMGLAISLVS 449
+VHRIGR GRA +R G+A +LV+
Sbjct: 556 MHVHRIGRTGRAGDRDGVAYTLVT 579
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 66.5 bits (155), Expect = 2e-11
Identities = 32/92 (34%), Positives = 50/92 (54%)
Frame = -1
Query: 733 CDNLERYFKTFGNELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLP 554
CD + R + G + + GD+ ER L FK+ + + TDVAARG+D+ +
Sbjct: 423 CDQVTRQLRMDG--WPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIK 480
Query: 553 FMINITLPDEKSNYVHRIGRVGRAERMGLAIS 458
++N P+ +Y+HRIGR GRA G+A +
Sbjct: 481 CVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFT 512
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 66.1 bits (154), Expect = 3e-11
Identities = 32/82 (39%), Positives = 48/82 (58%)
Frame = -1
Query: 670 GDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIGRV 491
GD R + F++ + LI TD+ ARGID+ + +IN LP + NY+HRIGR
Sbjct: 310 GDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRS 369
Query: 490 GRAERMGLAISLVSTVPEKVWY 425
GR R G+AI+ V+ E++ +
Sbjct: 370 GRFGRKGVAINFVTRDDERMLF 391
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 65.7 bits (153), Expect = 3e-11
Identities = 33/88 (37%), Positives = 51/88 (57%)
Frame = -1
Query: 697 NELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKS 518
N ++ L GD +R+ L F+ + L+ TDVA+RG+DI + +I+ LP++
Sbjct: 373 NSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPE 432
Query: 517 NYVHRIGRVGRAERMGLAISLVSTVPEK 434
+VHR GR GRA + G AI L+ T +K
Sbjct: 433 TFVHRSGRTGRAGKEGSAI-LMHTSSQK 459
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 65.7 bits (153), Expect = 3e-11
Identities = 31/80 (38%), Positives = 48/80 (60%)
Frame = -1
Query: 670 GDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIGRV 491
GD R + F++ + LI TD+ ARGID+ + +IN LP + NY+HRIGR
Sbjct: 312 GDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRS 371
Query: 490 GRAERMGLAISLVSTVPEKV 431
GR R G+AI+ +++ E++
Sbjct: 372 GRFGRKGVAINFMTSEDERM 391
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 65.3 bits (152), Expect = 5e-11
Identities = 30/75 (40%), Positives = 43/75 (57%)
Frame = -1
Query: 685 CVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVH 506
C L GD +R+ L F++ L+ TDVAARG+D+ + +I+ LP+ +VH
Sbjct: 387 CEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVH 446
Query: 505 RIGRVGRAERMGLAI 461
R GR GRA + G AI
Sbjct: 447 RTGRTGRAGKKGSAI 461
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 65.3 bits (152), Expect = 5e-11
Identities = 33/90 (36%), Positives = 48/90 (53%)
Frame = -1
Query: 733 CDNLERYFKTFGNELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLP 554
CD + R + G + + GD+ ER L F++ + + TDVAARG+D+ +
Sbjct: 357 CDQITRQLRMDG--WPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVK 414
Query: 553 FMINITLPDEKSNYVHRIGRVGRAERMGLA 464
++IN P +YVHRIGR GRA G A
Sbjct: 415 YVINYDFPGSLEDYVHRIGRTGRAGAKGTA 444
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 64.9 bits (151), Expect = 6e-11
Identities = 31/82 (37%), Positives = 48/82 (58%)
Frame = -1
Query: 670 GDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIGRV 491
GD R + F++ + LI TD+ ARGID+ + +IN LP + NY+HRIGR
Sbjct: 310 GDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRS 369
Query: 490 GRAERMGLAISLVSTVPEKVWY 425
GR R G+AI+ V+ +++ +
Sbjct: 370 GRFGRKGVAINFVTLDDQRMLF 391
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 64.5 bits (150), Expect = 8e-11
Identities = 27/69 (39%), Positives = 43/69 (62%)
Frame = -1
Query: 655 KERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIGRVGRAER 476
+ ++ ++ FK+ LI T VAARG+D+ L ++N P+ +YVHR+GR GRA R
Sbjct: 651 RSQEKSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGR 710
Query: 475 MGLAISLVS 449
G A++ +S
Sbjct: 711 KGCAVTFIS 719
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 62.9 bits (146), Expect = 2e-10
Identities = 29/80 (36%), Positives = 43/80 (53%)
Frame = -1
Query: 688 SCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYV 509
SC + R F+N + L+CTD+ RGIDI + +IN P +Y+
Sbjct: 387 SCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYL 446
Query: 508 HRIGRVGRAERMGLAISLVS 449
HR+GR GR +GLA++LV+
Sbjct: 447 HRVGRSGRFGHLGLAVNLVT 466
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 62.9 bits (146), Expect = 2e-10
Identities = 29/80 (36%), Positives = 43/80 (53%)
Frame = -1
Query: 688 SCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYV 509
SC + R F+N + L+CTD+ RGIDI + +IN P +Y+
Sbjct: 387 SCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYL 446
Query: 508 HRIGRVGRAERMGLAISLVS 449
HR+GR GR +GLA++LV+
Sbjct: 447 HRVGRSGRFGHLGLAVNLVT 466
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 62.9 bits (146), Expect = 2e-10
Identities = 29/80 (36%), Positives = 43/80 (53%)
Frame = -1
Query: 688 SCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYV 509
SC + R F+N + L+CTD+ RGIDI + +IN P +Y+
Sbjct: 417 SCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYL 476
Query: 508 HRIGRVGRAERMGLAISLVS 449
HR+GR GR +GLA++LV+
Sbjct: 477 HRVGRSGRFGHLGLAVNLVT 496
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 62.5 bits (145), Expect = 3e-10
Identities = 28/80 (35%), Positives = 42/80 (52%)
Frame = -1
Query: 688 SCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYV 509
SC + R F+N + L+CTD+ RGIDI + +IN P Y+
Sbjct: 394 SCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYL 453
Query: 508 HRIGRVGRAERMGLAISLVS 449
HR+GR GR +GLA++L++
Sbjct: 454 HRVGRSGRFGHLGLAVNLIT 473
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 62.5 bits (145), Expect = 3e-10
Identities = 28/80 (35%), Positives = 42/80 (52%)
Frame = -1
Query: 688 SCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYV 509
SC + R F+N + L+CTD+ RGIDI + +IN P Y+
Sbjct: 394 SCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYL 453
Query: 508 HRIGRVGRAERMGLAISLVS 449
HR+GR GR +GLA++L++
Sbjct: 454 HRVGRSGRFGHLGLAVNLIT 473
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 61.3 bits (142), Expect = 7e-10
Identities = 31/82 (37%), Positives = 45/82 (54%)
Frame = -1
Query: 670 GDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIGRV 491
G K R L F + L+CTDVAARG+DI G+ +++ P + ++HR+GR
Sbjct: 301 GKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRT 360
Query: 490 GRAERMGLAISLVSTVPEKVWY 425
R ER G AI V +P++ Y
Sbjct: 361 ARMERQGRAI--VFLMPKETDY 380
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 60.9 bits (141), Expect = 1e-09
Identities = 37/86 (43%), Positives = 47/86 (54%)
Frame = -1
Query: 682 VCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHR 503
VC GD RK ++ F+ + LI TD+AARGIDI L +IN P +VHR
Sbjct: 300 VCY-GDMDQDARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHR 358
Query: 502 IGRVGRAERMGLAISLVSTVPEKVWY 425
+GR RA R G A S V+ PE + Y
Sbjct: 359 VGRAARAGRTGCAYSFVT--PEDMPY 382
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/77 (37%), Positives = 42/77 (54%)
Frame = -1
Query: 691 LSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNY 512
+S + + GD K R L F + L+CTDVAARG+DI G+ +++ P + + +
Sbjct: 303 ISLIPIHGDMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMF 362
Query: 511 VHRIGRVGRAERMGLAI 461
HR GR R R G AI
Sbjct: 363 NHRAGRTARLGRQGRAI 379
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 60.1 bits (139), Expect = 2e-09
Identities = 25/74 (33%), Positives = 44/74 (59%)
Frame = -1
Query: 676 LXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIG 497
+ GD R L+ FKN ++K L+ +++ARG+D++ ++N+ LP + +Y HR G
Sbjct: 437 MHGDLGKLGRSTVLKKFKNGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHYAHRAG 496
Query: 496 RVGRAERMGLAISL 455
R GR R G +++
Sbjct: 497 RTGRLGRKGTVVTV 510
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/74 (39%), Positives = 44/74 (59%)
Frame = -1
Query: 676 LXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIG 497
L G+ +R+ L F+N + L+ T+VAARG+DI+ + +I P E Y+HR G
Sbjct: 376 LHGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSG 435
Query: 496 RVGRAERMGLAISL 455
R GRA G+A++L
Sbjct: 436 RTGRAGNTGVAVTL 449
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 57.2 bits (132), Expect = 1e-08
Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = -1
Query: 682 VC-LXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVH 506
VC L + K + R +++ F+ S+ LI TD+ ARGIDI + +I+ LP YVH
Sbjct: 529 VCTLFSEMKQRARLKSIDRFRASENGILIATDLVARGIDIKNVRTIIHYKLPHSAEVYVH 588
Query: 505 RIGRVGRAERMGLAISLV 452
R GR RA G +I+L+
Sbjct: 589 RCGRTARAFADGCSIALI 606
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 56.0 bits (129), Expect = 3e-08
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Frame = -1
Query: 697 NELSCVCLXGDRKPKERKDNLEIFKNSQ--VKFLICTDVAARGIDISGLPFMINITLPDE 524
N++S V G+ ++R +NL+ FK+ + L+CTD+AARG+D+ + ++ P
Sbjct: 393 NQISTVNYHGEVPAEQRVENLKKFKDEEGDCPTLVCTDLAARGLDLD-VDHVVMFDFPKN 451
Query: 523 KSNYVHRIGRVGRAERMGLAISLVS 449
+Y+HR GR R G SLVS
Sbjct: 452 SIDYLHRTGRTARMGAKGKVTSLVS 476
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 55.6 bits (128), Expect = 4e-08
Identities = 25/68 (36%), Positives = 42/68 (61%)
Frame = -1
Query: 628 FKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIGRVGRAERMGLAISLVS 449
F ++ L+CTDVAARG+DI + ++I PD+ + Y+HR+GR R E +L+
Sbjct: 380 FMKAKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHRVGRTARGEG-AKGKALLV 438
Query: 448 TVPEKVWY 425
+PE++ +
Sbjct: 439 LIPEELQF 446
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 55.2 bits (127), Expect = 5e-08
Identities = 23/73 (31%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = -1
Query: 664 RKPKERKDNL-EIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIGRVG 488
RKP+ + + + F+ S+ L+ +DV+ARG+D + ++ + LP ++ Y+HR+GR G
Sbjct: 673 RKPQSYRTRVSDEFRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTG 732
Query: 487 RAERMGLAISLVS 449
R + G + L++
Sbjct: 733 RKGKEGEGVLLLA 745
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 54.4 bits (125), Expect = 8e-08
Identities = 23/73 (31%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = -1
Query: 664 RKPKERKDNL-EIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIGRVG 488
RKP+ + + + F+ S+ L+ +DV+ARG+D + ++ + LP ++ Y+HR+GR G
Sbjct: 371 RKPQSYRTRVSDEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTG 430
Query: 487 RAERMGLAISLVS 449
R + G + L++
Sbjct: 431 RKGKEGEGVLLLA 443
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Frame = -1
Query: 664 RKPKERKDNLEI-FKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIGRVG 488
RKP+ + + F+ S+ L+ +DV+ARG+D + ++ + LP ++ Y+HR+GR G
Sbjct: 345 RKPQSYRTRVSNEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTG 404
Query: 487 RAERMGLAISLVS 449
R + G I L++
Sbjct: 405 RKGKEGEGILLLA 417
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/78 (33%), Positives = 40/78 (51%)
Frame = -1
Query: 676 LXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIG 497
L G + ++R+ FK + L+ TDVAARG+D + +I P E + YVHR+G
Sbjct: 379 LHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEYVHRVG 438
Query: 496 RVGRAERMGLAISLVSTV 443
R R G A+ + +
Sbjct: 439 RTARIGEKGEALLFLQPI 456
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 53.2 bits (122), Expect = 2e-07
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Frame = -1
Query: 733 CDNLERYFKTFGN---ELSCVCLXGDRKPKERKDNLEIFKNSQVK----FLICTDVAARG 575
C +E FK +L + + R N++ F +SQ + FL+CTD A+RG
Sbjct: 648 CRKVENIFKRVDRKERQLHVLPFHAALSQESRLTNMQEFTSSQPEENSLFLVCTDRASRG 707
Query: 574 IDISGLPFMINITLPDEKSNYVHRIGRVGRAER 476
ID SG+ ++ P + S YV R+GR R R
Sbjct: 708 IDFSGVDHVVLFDFPRDPSEYVRRVGRTARGAR 740
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/72 (30%), Positives = 39/72 (54%)
Frame = -1
Query: 694 ELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSN 515
+ C+ + G +R F ++ L+CT+VAARG+D + +++ PD ++
Sbjct: 424 KFDCLEIRGGIDQNKRTPTFLQFIKAETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTD 483
Query: 514 YVHRIGRVGRAE 479
Y+HR+GR R E
Sbjct: 484 YIHRVGRTARGE 495
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/73 (31%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Frame = -1
Query: 664 RKPKERKDNL-EIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIGRVG 488
RKP+ + + + FK S L+ +DV+ARG++ + +I + +P ++ Y+HR+GR G
Sbjct: 620 RKPQLHRTRVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTG 679
Query: 487 RAERMGLAISLVS 449
R + G + L++
Sbjct: 680 REGKGGEGLLLIA 692
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 52.0 bits (119), Expect = 5e-07
Identities = 21/67 (31%), Positives = 37/67 (55%)
Frame = -1
Query: 649 RKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIGRVGRAERMG 470
R L+ F+ ++ L+ +D RG+D+ G+ +IN +P ++HR GR RA + G
Sbjct: 367 RSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRTARAGQAG 426
Query: 469 LAISLVS 449
+L+S
Sbjct: 427 RCFTLLS 433
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 51.6 bits (118), Expect = 6e-07
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = -1
Query: 724 LERYFKT-FGNELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFM 548
L + KT + L + L GD R +L + L+ TD+AARGID+ +
Sbjct: 354 LMEFLKTSYKGSLEILLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHI 413
Query: 547 INITLPDEKSNYVHRIGRVGR 485
N LP ++Y+HR GR GR
Sbjct: 414 FNFDLPQTVTDYLHRAGRAGR 434
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 51.6 bits (118), Expect = 6e-07
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = -1
Query: 724 LERYFKT-FGNELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFM 548
L + KT + L + L GD R +L + L+ TD+AARGID+ +
Sbjct: 197 LMEFLKTSYKGSLEILLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHI 256
Query: 547 INITLPDEKSNYVHRIGRVGR 485
N LP ++Y+HR GR GR
Sbjct: 257 FNFDLPQTVTDYLHRAGRAGR 277
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 51.6 bits (118), Expect = 6e-07
Identities = 23/73 (31%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Frame = -1
Query: 664 RKPKERKDNL-EIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIGRVG 488
RKP+ + + + FK S L+ +DV+ARG++ + +I + +P ++ Y+HR+GR G
Sbjct: 667 RKPQLHRTCVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTG 726
Query: 487 RAERMGLAISLVS 449
R + G + L++
Sbjct: 727 REGKGGKGLLLIA 739
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/81 (30%), Positives = 41/81 (50%)
Frame = -1
Query: 691 LSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNY 512
+ + + G++ KER+D + F +V L+ T V RG+D+ + +I +P Y
Sbjct: 383 VKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEY 442
Query: 511 VHRIGRVGRAERMGLAISLVS 449
+H IGR R G AI V+
Sbjct: 443 IHVIGRASRMGEKGTAIVFVN 463
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/81 (30%), Positives = 41/81 (50%)
Frame = -1
Query: 691 LSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNY 512
+ + + G++ KER+D + F +V L+ T V RG+D+ + +I +P Y
Sbjct: 246 VKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEY 305
Query: 511 VHRIGRVGRAERMGLAISLVS 449
+H IGR R G AI V+
Sbjct: 306 IHVIGRASRMGEKGTAIVFVN 326
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 49.2 bits (112), Expect = 3e-06
Identities = 27/73 (36%), Positives = 40/73 (54%)
Frame = -1
Query: 667 DRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIGRVG 488
+ K + K+N + K S+ K L RGID + +IN +P + Y+HRIGR G
Sbjct: 370 EAKGEANKENKKNNKRSKPK-LDAEFGVVRGIDFKKVHTVINFDMPQSVTGYIHRIGRTG 428
Query: 487 RAERMGLAISLVS 449
RA G ++SL+S
Sbjct: 429 RAYSSGSSVSLIS 441
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/79 (32%), Positives = 40/79 (50%)
Frame = -1
Query: 691 LSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNY 512
+ C + K ER + L F+ + F +CTD AARG+D+ + +I ++
Sbjct: 449 IQCYRYHKNHKLDERANILADFRETGGVF-VCTDAAARGVDVPNVSHVIQADFASSAVDF 507
Query: 511 VHRIGRVGRAERMGLAISL 455
+HRIGR RA + G SL
Sbjct: 508 LHRIGRTARAGQYGTVTSL 526
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = -1
Query: 604 LICTDVAARGIDIS-GLPFMINITLPDEKSNYVHRIGRVGRAERMGLAISLVSTVPEKV 431
L CTDV ARG+D + +++ + P++ ++Y+HR+GR R G ++ ++ EK+
Sbjct: 371 LFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSLLFLTPSEEKM 429
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 44.8 bits (101), Expect = 7e-05
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Frame = -1
Query: 670 GDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSN-------Y 512
G+ +R ++ FK + LI TDV ARG D + ++N LP + Y
Sbjct: 372 GNLTESDRDKIVKEFKECLTQVLIATDVIARGFDQQRVNLVVNYNLPTKYETGEPDYEVY 431
Query: 511 VHRIGRVGRAERMGLAISLV 452
+HR+GR GR R G +L+
Sbjct: 432 LHRVGRAGRFGRKGAVFNLL 451
>At1g12700.1 68414.m01473 helicase domain-containing protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles PF01535: PPR repeat, PF00271:
Helicase conserved C-terminal domain
Length = 828
Score = 41.9 bits (94), Expect = 5e-04
Identities = 20/67 (29%), Positives = 35/67 (52%)
Frame = -1
Query: 676 LXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIG 497
L D + R L+ FKN V+ L+ ++ G++ + M+++ LP + +Y HR G
Sbjct: 645 LNRDLRKLRRSSVLKKFKNRDVRVLVTNELLTWGLEDAECDLMVDLELPTDAVHYAHRAG 704
Query: 496 RVGRAER 476
R+ R R
Sbjct: 705 RMRRPGR 711
>At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative similar
to C-terminal half of transcription-repair coupling
factor (TRCF) GB:Q55750 [Synechocystis PCC6803];
contains Pfam profile: helicases conserved C-terminal
domain
Length = 823
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/101 (21%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Frame = -1
Query: 775 QNGPXHNILPH*XDCDNLERYFKTFGNELSCVCLXGDRKPKERKDNLEIFKNSQVKFLIC 596
+ G +LP + + + + ++ G + K+ ++ +E F ++K LIC
Sbjct: 479 RGGQVFYVLPRIKGLEEVMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILIC 538
Query: 595 TDVAARGIDISGLPFMINITLPDEKSNYVHRI-GRVGRAER 476
T++ G+DI +I + ++++ GRVGRA++
Sbjct: 539 TNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADK 579
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = -1
Query: 670 GDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEK 521
G K R L F + L+CTDVAARG+DI G+ ++ ++ + D +
Sbjct: 274 GKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIVYIRSLAIKDRE 323
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 36.3 bits (80), Expect = 0.024
Identities = 20/88 (22%), Positives = 41/88 (46%)
Frame = -1
Query: 736 DCDNLERYFKTFGNELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGL 557
+ D + +Y + N ++ K+R E F +++++ ++ T G+D +
Sbjct: 498 ETDMISKYLRD--NNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVAFGMGLDKGDV 555
Query: 556 PFMINITLPDEKSNYVHRIGRVGRAERM 473
+I+ ++P YV IGR GR R+
Sbjct: 556 GAVIHFSVPGSMEEYVQEIGRAGRDGRL 583
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 35.9 bits (79), Expect = 0.032
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = -1
Query: 733 CDNLERYFKTFGNELSCVCLXGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGL 557
CD + R + G + + GD+ ER L FK+ + + TDVAARG+ SG+
Sbjct: 423 CDQVTRQLRMDG--WPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLVSSGI 479
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 31.9 bits (69), Expect = 0.52
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -1
Query: 655 KERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIGRVGR 485
K+R D ++ +V+ + T GID + + F+I+ TL +Y GR GR
Sbjct: 465 KQRVDVQRKWQTGEVRIVCATIAFGMGIDKADVRFVIHNTLSKAVESYYQESGRAGR 521
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar
to CAF protein [Arabidopsis thaliana] GI:6102610;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF03368:
Domain of unknown function, PF00636: RNase3 domain,
PF00035: Double-stranded RNA binding motif
Length = 1676
Score = 31.1 bits (67), Expect = 0.90
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = -1
Query: 637 LEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIGR 494
L+ F++ ++ L+ T V G+DI +I LP+ ++++ GR
Sbjct: 564 LKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQSRGR 611
>At1g51490.1 68414.m05795 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; similar to Cyanogenic Beta-Glucosidase
(GI:1311386) (pdb:1CBG) [Trifolium repens] (J. Mol.
Biol. 229 (3), 791-793 (1993))
Length = 484
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +1
Query: 241 RQTHWMGLSYPSRPAVS*YLGDLQYPPGTEVHCTTC 348
R W+ L+ P AV Y GD QYPPG CT C
Sbjct: 176 RVKFWITLNQPYSLAVKGY-GDGQYPPG---RCTDC 207
>At1g02020.2 68414.m00122 nitroreductase family protein contains
Pfam PF00881: nitroreductase family protein profile;
contains Prosite PS00343: Gram-positive cocci surface
proteins 'anchoring' hexapeptide
Length = 543
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +3
Query: 567 MSMPRAATSVQIKNFTWLFLNISKLSLRSFGFRSPXRHTQDSSLPNVLKYRSRLSQSI 740
+S+PR S I F F + S S S +P + SSL VLKY ++ S+
Sbjct: 28 LSIPRTPKSAFI--FAMTFSSSSSSSSSSSSVENPNKDDSSSSLELVLKYHNQTKHSL 83
>At1g02020.1 68414.m00121 nitroreductase family protein contains
Pfam PF00881: nitroreductase family protein profile;
contains Prosite PS00343: Gram-positive cocci surface
proteins 'anchoring' hexapeptide
Length = 642
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +3
Query: 567 MSMPRAATSVQIKNFTWLFLNISKLSLRSFGFRSPXRHTQDSSLPNVLKYRSRLSQSI 740
+S+PR S I F F + S S S +P + SSL VLKY ++ S+
Sbjct: 28 LSIPRTPKSAFI--FAMTFSSSSSSSSSSSSVENPNKDDSSSSLELVLKYHNQTKHSL 83
>At5g66440.1 68418.m08379 expressed protein
Length = 252
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -1
Query: 340 YNEPQYLA-DIEDHLNITIQQVETDMKVPSNEFDGKVVYGEKRKQAGSGYQDHVSQMAPV 164
Y++ Q + D++ + N+T+ + +++ S+ VYG + SG Q M +
Sbjct: 128 YDDKQVIVTDLDSNPNLTVDENMPHVEIDSDSSPHSKVYGRSKSDV-SGKQSSNMVMMMM 186
Query: 163 VKSLQELESQ 134
+SLQ E++
Sbjct: 187 KRSLQRSETE 196
>At5g60440.1 68418.m07581 MADS-box protein (AGL62) contains Pfal
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain)
Length = 299
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = -1
Query: 316 DIEDHLNITIQQVETDMKVPSNEFDGKVVYGEKRKQAGSGYQDHVSQMA 170
D+ +HL + Q+ET+ K ++D EK K G+ ++D V ++A
Sbjct: 101 DLNNHLTQVLSQLETEKK----KYDELKKIREKTKALGNWWEDPVEELA 145
>At2g31725.1 68415.m03872 expressed protein
Length = 149
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/75 (28%), Positives = 39/75 (52%)
Frame = -1
Query: 322 LADIEDHLNITIQQVETDMKVPSNEFDGKVVYGEKRKQAGSGYQDHVSQMAPVVKSLQEL 143
L+ I+DH+N T+QQ K FD + ++++ S +H S PVVKS Q
Sbjct: 31 LSPIQDHINFTLQQAY--FKCAYECFDRR-----RKQEEISNCVEHCS--VPVVKSQQYF 81
Query: 142 ESQAQLYYLKMHHNV 98
E++ + +++ ++
Sbjct: 82 ENEMAQFQERLNRSL 96
>At4g00450.1 68417.m00062 expressed protein
Length = 2124
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 421 GEWCSSRGRNCWNTNLIDDKPKGCCMWYNEPQYLADI 311
GE+ + +G+NC N L KP G + P L DI
Sbjct: 538 GEFTARKGKNCRNNFLGVSKPSGSMDAFESPGPLHDI 574
>At3g01680.1 68416.m00099 expressed protein
Length = 740
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +2
Query: 431 YLFGYGGDETDGQAH---AFRATDAPDAMYVVGLFVGKRYVDHERQARDV 571
Y+F YGGD+ D A +AT + + +VGKR H Q R +
Sbjct: 524 YIFLYGGDDLDWIRRFTMAAKATAKDSNVNLEMAYVGKRNHSHREQIRRI 573
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,725,906
Number of Sequences: 28952
Number of extensions: 350987
Number of successful extensions: 1084
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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