Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C10
         (818 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78539-3|CAB01730.1|  177|Caenorhabditis elegans Hypothetical pr...    31   1.3  
AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical ...    28   9.2  

>Z78539-3|CAB01730.1|  177|Caenorhabditis elegans Hypothetical
           protein C31E10.4 protein.
          Length = 177

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -3

Query: 600 LKCQYXNPTKSSRKSLTPSKRKCLM----KSKCLLTSPTRSTKE 481
           ++C+   PT  SR+ LT S R+C+      + C + S TR  K+
Sbjct: 1   MRCKIGTPTSISRRHLTDSARRCIQLVVGVACCSVPSATRKIKQ 44


>AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical
           protein Y53C10A.4 protein.
          Length = 908

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 490 YQGSSSAARQRSTLPGQ-VPRPYLLQE 413
           Y+ SSS++   S++P    PRPY L+E
Sbjct: 703 YKSSSSSSSSTSSIPSDPAPRPYFLKE 729


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,252,986
Number of Sequences: 27780
Number of extensions: 228069
Number of successful extensions: 572
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)