Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C09
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   111   1e-25
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   109   5e-25
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    28   1.4  
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc...    27   4.1  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   9.5  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    25   9.5  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  111 bits (266), Expect = 1e-25
 Identities = 62/150 (41%), Positives = 85/150 (56%), Gaps = 2/150 (1%)
 Frame = -3

Query: 735 KDPXIXFXXXSGSDSRFPATSPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPL 556
           + P + F   +G    F    PGVE           LAPGGHLGRFVIWT+SAFG LD +
Sbjct: 205 RGPLVVFNEDAGIVKAF-RNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSV 263

Query: 555 FGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTN 382
           FGS    ++ KKN+ LP+  ++N D+TRL+ SDEI+ +++A    RV RA  +K NPL N
Sbjct: 264 FGSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKN 323

Query: 381 NKAMLKLNPYAAVXEEESYLRAAQKEELEG 292
              + +LNPYA   +    L   +  +  G
Sbjct: 324 KAVLARLNPYAKAYKANVKLNTGKTPKAAG 353



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -1

Query: 803 VYKXQXLRAGKGKMRNXSXYPA*RTPS*XSXRXQGLTRAFXQHPPV 666
           V   + LRAGKGK+RN       R P        G+ +AF   P V
Sbjct: 183 VANSRKLRAGKGKLRNRRHVQR-RGPLVVFNEDAGIVKAFRNIPGV 227


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  109 bits (262), Expect = 5e-25
 Identities = 60/131 (45%), Positives = 80/131 (61%), Gaps = 2/131 (1%)
 Frame = -3

Query: 735 KDPXIXFXXXSGSDSRFPATSPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPL 556
           + P + F   +G    F    PGVE           LAPGGHLGRFVIWT+SAFG LD +
Sbjct: 205 RGPLVVFNEDTGIVKAF-RNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSV 263

Query: 555 FGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTN 382
           FGS    ++ KKN+ LP+  ++N D+TRL+ SDEI+ +++A    RV RA  +K NPL N
Sbjct: 264 FGSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKN 323

Query: 381 NKAMLKLNPYA 349
              + +LNPYA
Sbjct: 324 KAVLSRLNPYA 334



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -1

Query: 803 VYKXQXLRAGKGKMRNXSXYPA*RTPS*XSXRXQGLTRAFXQHPPV 666
           V   + LRAGKGK+RN       R P        G+ +AF   P V
Sbjct: 183 VANSRKLRAGKGKLRNRRHVQR-RGPLVVFNEDTGIVKAFRNIPGV 227


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 19/73 (26%), Positives = 36/73 (49%)
 Frame = -3

Query: 531 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 352
           KQK + +  Q K     LT+   S E + VL       +R T+K   LTN+  ++K +P 
Sbjct: 730 KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSPT 787

Query: 351 AAVXEEESYLRAA 313
             +  +++  +++
Sbjct: 788 PQITVKQNTTKSS 800


>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 375 AMLKLNPYAAVXEEESYLRAAQKEELE 295
           A+LK + Y ++ EEES  R  ++EE++
Sbjct: 180 ALLKEDAYGSIEEEESKKRKFEEEEID 206


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/54 (31%), Positives = 32/54 (59%)
 Frame = +1

Query: 349 RVRIEFQHRLVVSERVQFACSTDHAFVGSTEDLPDLIRLEKTCEVSVGHLRLGQ 510
           +V +EF+ RL + +RV+       AF+GS E +  L+ + +T + ++  L LG+
Sbjct: 207 QVAVEFRKRLNIGDRVKDGLLYKDAFLGS-EAVDVLMHIVRTTDRNLA-LLLGR 258


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
 Frame = -3

Query: 522 KNFNLPQPKMANTDLTRLLKSDEIRKVLRAP----------NKRVIRATRKLNPL-TNNK 376
           KNF   +  M+  ++  +L  DE+R + R            +K +I  +++ + L  N +
Sbjct: 136 KNFFEDESLMSTEEIIEILSLDELRSLARQTKVCGKSRSEISKEIIFLSKRQSVLHCNGQ 195

Query: 375 AMLKLNPYAAVXEEESYLR 319
             L  + +  + ++ES+LR
Sbjct: 196 QFLSFDAFGVMHKQESFLR 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,382,763
Number of Sequences: 5004
Number of extensions: 40881
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)