Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_C09
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 122 3e-28
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 119 2e-27
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 31 1.1
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 30 2.5
02_04_0073 - 19471254-19472681 28 7.6
11_01_0205 + 1617044-1617197,1617845-1618233 28 10.0
03_03_0125 - 14630078-14630136,14630197-14631160 28 10.0
03_03_0122 - 14617879-14618871 28 10.0
01_06_0160 - 27095727-27096008,27096164-27096652,27096983-270971... 28 10.0
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 122 bits (294), Expect = 3e-28
Identities = 61/143 (42%), Positives = 86/143 (60%)
Frame = -3
Query: 735 KDPXIXFXXXSGSDSRFPATSPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPL 556
K P I + + PGV+ LAPGGHLGRFVIWT+SAF +L+ +
Sbjct: 209 KGPLIVYGTEGSKIVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEV 268
Query: 555 FGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNK 376
+G+++ PS +KK F LP+PKMAN DL R++ SDE++ V++ NK V R ++ NPL N
Sbjct: 269 YGTFEAPSLKKKGFILPRPKMANADLGRIINSDEVQSVVKPLNKEVKRREKRKNPLKNVA 328
Query: 375 AMLKLNPYAAVXEEESYLRAAQK 307
A+LKLNPY + + L A +
Sbjct: 329 AVLKLNPYFGTARKMATLAEAAR 351
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 119 bits (287), Expect = 2e-27
Identities = 61/143 (42%), Positives = 83/143 (58%)
Frame = -3
Query: 735 KDPXIXFXXXSGSDSRFPATSPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPL 556
K P I + + PGV+ LAPGGHLGRFVIWT+ AF +LD +
Sbjct: 208 KGPLIVYGTEGSKVVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEV 267
Query: 555 FGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNK 376
+G + TP+ +KK F LP+PKMAN DL+RL+ SDE++ V++ NK V + NPL N
Sbjct: 268 YGGFDTPALKKKGFVLPRPKMANADLSRLINSDEVQSVVKPINKEVKLREARRNPLKNVA 327
Query: 375 AMLKLNPYAAVXEEESYLRAAQK 307
A+LKLNPY + + L A +
Sbjct: 328 AVLKLNPYFGTARKMAALAEAAR 350
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 31.1 bits (67), Expect = 1.1
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = -1
Query: 638 TS*SWLREVILDVSSSGLSPHSAGLTPYSGHGRHHQNKRR----TSTCPNRRWPTLTSHV 471
+S S+LR + LD+SSS +P S+ H HHQ + S+ P WP
Sbjct: 376 SSSSFLRCLGLDMSSSSSAPPSSSGQQQQHHHHHHQETMQVPLPASSLP--EWPPRLQPE 433
Query: 470 FSSLMRSGRSSVLPTNA 420
S ++ SG LP +A
Sbjct: 434 PSPMLSSGLGLGLPYDA 450
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -3
Query: 624 APG--GHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANT 484
APG G GR+V+ SA LDP F SW S++ K F++ + A++
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717
>02_04_0073 - 19471254-19472681
Length = 475
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -1
Query: 584 SPHSAGLTPYSGHGRHHQNKRRTSTCPNRRWPTLTSHVFSSLMR 453
+P G +P S HG HH++++ T N + L V ++R
Sbjct: 20 APRPRGASPLSSHGHHHRSRKIHRTFNNVKITVLCGLVTILVLR 63
>11_01_0205 + 1617044-1617197,1617845-1618233
Length = 180
Score = 27.9 bits (59), Expect = 10.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 358 IEFQHRLVVSERVQFACSTDHAFVGSTEDL 447
++ HRLV + +F +H FV S ++L
Sbjct: 35 LQISHRLVAGQNYEFQSGINHGFVNSRKNL 64
>03_03_0125 - 14630078-14630136,14630197-14631160
Length = 340
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -3
Query: 606 GRFVIWTQSAFGRL-DPLFGSWK 541
G FV+W AFG L L G+WK
Sbjct: 127 GGFVVWADRAFGPLAGSLLGTWK 149
>03_03_0122 - 14617879-14618871
Length = 330
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -3
Query: 606 GRFVIWTQSAFGRL-DPLFGSWK 541
G FV+W AFG L L G+WK
Sbjct: 124 GGFVVWADRAFGPLAGSLLGTWK 146
>01_06_0160 -
27095727-27096008,27096164-27096652,27096983-27097132,
27097656-27097920,27097995-27098274,27100311-27100388,
27100597-27101240,27101334-27101412,27101489-27101612,
27101782-27101882,27102870-27103068
Length = 896
Score = 27.9 bits (59), Expect = 10.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 574 ECGLSPDDETSKMTSRSQLQEVQ 642
+CG+ PD+ S++ S+ QEV+
Sbjct: 51 DCGMDPDEAVSRLLSQDTFQEVK 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,507,838
Number of Sequences: 37544
Number of extensions: 304796
Number of successful extensions: 823
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -