Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C09
         (803 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   103   2e-22
AL032657-10|CAA21741.2|  343|Caenorhabditis elegans Hypothetical...    29   2.9  
AC024751-6|AAK21506.1|  270|Caenorhabditis elegans Hypothetical ...    29   3.9  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  103 bits (246), Expect = 2e-22
 Identities = 49/116 (42%), Positives = 72/116 (62%), Gaps = 1/116 (0%)
 Frame = -3

Query: 672 PGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQ-KKNFNLPQPK 496
           PGV+           LAPGGHLGR +IWT+SAF +LD ++G+    S Q KK +++P P 
Sbjct: 224 PGVDVMNVERLNLLKLAPGGHLGRLIIWTESAFKKLDTIYGTTVANSSQLKKGWSVPLPI 283

Query: 495 MANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVXEEES 328
           MAN+D +R+++S+E+ K +RAP K  +      NPL     + KLNPYA++  + S
Sbjct: 284 MANSDFSRIIRSEEVVKAIRAPKKNPVLPKVHRNPLKKRTLLYKLNPYASILRKAS 339


>AL032657-10|CAA21741.2|  343|Caenorhabditis elegans Hypothetical
           protein Y47H9C.10 protein.
          Length = 343

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 23/82 (28%), Positives = 36/82 (43%)
 Frame = -3

Query: 525 KKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAA 346
           K ++N   P    TD    +    + K+L A    V   ++KL  L + +  +  N Y  
Sbjct: 23  KMSYNPKSPIF--TDFPDTVVHTVLEKLLPAERMVVRNVSKKLRNLFDERYRVIKNVYMQ 80

Query: 345 VXEEESYLRAAQKEELEGSC*C 280
           V +EE+ L     EELE +  C
Sbjct: 81  VQDEEAILFFENHEELEKTFSC 102


>AC024751-6|AAK21506.1|  270|Caenorhabditis elegans Hypothetical
           protein Y18H1A.2 protein.
          Length = 270

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -1

Query: 347 PXLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRER 213
           P LKRK + E R+RK  +  +D+E+   K  K++   K +K R R
Sbjct: 148 PCLKRKELEEERKRK--REDSDSEEKAKKRHKKDKKKKKKKHRHR 190


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = -3

Query: 606  GRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 427
            G F+  T    G     F   +TP   +  +N   P+ A      +++  +IR +L  P 
Sbjct: 2789 GEFLKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPL 2848

Query: 426  KRVI 415
            K  +
Sbjct: 2849 KEFV 2852


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = -3

Query: 606  GRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 427
            G F+  T    G     F   +TP   +  +N   P+ A      +++  +IR +L  P 
Sbjct: 2789 GEFLKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPL 2848

Query: 426  KRVI 415
            K  +
Sbjct: 2849 KEFV 2852


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,261,547
Number of Sequences: 27780
Number of extensions: 234853
Number of successful extensions: 675
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)