Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C09
         (803 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...   123   1e-28
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...   117   8e-27
At3g58160.1 68416.m06485 myosin heavy chain, putative similar to...    28   8.3  
At1g30950.1 68414.m03790 unusual floral organ (UFO) / F-box fami...    28   8.3  

>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score =  123 bits (297), Expect = 1e-28
 Identities = 64/145 (44%), Positives = 84/145 (57%)
 Frame = -3

Query: 741 SVKDPXIXFXXXSGSDSRFPATSPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLD 562
           S K P + +        +     PGVE           LAPGGHLGRFVIWT+SAF +L+
Sbjct: 208 SRKGPLVVYGTEGSKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLE 267

Query: 561 PLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTN 382
            ++GS++ PS++KK + LP+ KM N DL R++ SDEI+ V+    K   RA  K NPL N
Sbjct: 268 SIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLKN 327

Query: 381 NKAMLKLNPYAAVXEEESYLRAAQK 307
              MLKLNPYA   +  S L  AQ+
Sbjct: 328 LNVMLKLNPYAKTAKRMSLLAEAQR 352


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score =  117 bits (282), Expect = 8e-27
 Identities = 61/145 (42%), Positives = 81/145 (55%)
 Frame = -3

Query: 741 SVKDPXIXFXXXSGSDSRFPATSPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLD 562
           S K P + F        +     PGVE           LAPGGHLGRFVIWT+SAF +L+
Sbjct: 209 SRKGPLVVFGTEGAKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLE 268

Query: 561 PLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTN 382
            ++GS++ PS++KK + LP+ KM N DL R++ SDE++ V+        RA  K NPL N
Sbjct: 269 SIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNPLKN 328

Query: 381 NKAMLKLNPYAAVXEEESYLRAAQK 307
              M KLNPYA   +  S L  A +
Sbjct: 329 LNVMFKLNPYAKTAKRMSLLAEASR 353


>At3g58160.1 68416.m06485 myosin heavy chain, putative similar to
            myosin heavy chain [Arabidopsis thaliana]
            gi|602328|emb|CAA84067.
          Length = 1242

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -1

Query: 299  LKALADAEKSGLKLSKRNPAMKAEKLRERRRKNI 198
            LKAL   EK    +S+R  A +A +L ERRRK +
Sbjct: 1092 LKALLQVEKQRADISERKCA-EARELGERRRKRL 1124


>At1g30950.1 68414.m03790 unusual floral organ (UFO) / F-box family
           protein (FBX1) E3 ubiquitin ligase SCF complex F-box
           subunit; almost identical to unusual floral organs
           (UFO)GI:4376159 from [Arabidopsis thaliana]
           Landsberg-erecta; one amino acid difference
          Length = 442

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 98  RPFQLSASYLPSSWEEAGSS*QPASWVS 181
           R ++LS +Y+PS +  +GSS    SWVS
Sbjct: 138 RWYRLSFAYIPSGFYPSGSSGGLVSWVS 165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,907,426
Number of Sequences: 28952
Number of extensions: 230965
Number of successful extensions: 633
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)