Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_C08
(802 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 213 2e-56
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 104 1e-23
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 95 1e-20
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 93 4e-20
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 83 4e-17
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 58 1e-09
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 58 1e-09
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 54 2e-08
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 2e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.8
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 7.2
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 213 bits (521), Expect = 2e-56
Identities = 97/113 (85%), Positives = 104/113 (92%)
Frame = -1
Query: 634 QPSFXGMEACGIHETTYSSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP 455
QPS G+E GIHE TY+SIMKCDVDIRKDLY N V+SGGTTMYPGIADRMQKEI ALAP
Sbjct: 263 QPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAP 322
Query: 454 STMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 296
S+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 323 SSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
Score = 31.9 bits (69), Expect = 0.11
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -2
Query: 714 EXSXEXPDGQVITIGNXKIPLP 649
E S E PDGQVITIGN + P
Sbjct: 237 EKSYELPDGQVITIGNERFRAP 258
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 104 bits (250), Expect = 1e-23
Identities = 48/119 (40%), Positives = 77/119 (64%)
Frame = -1
Query: 652 AQRLXSQPSFXGMEACGIHETTYSSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKE 473
A + P G EA G+H + SI+ D+D+R LY+N VLSGG+T+ G +R E
Sbjct: 262 APEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISE 321
Query: 472 ITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 296
+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ +EY ++ +++ R+ F
Sbjct: 322 LRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 95.1 bits (226), Expect = 1e-20
Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Frame = -1
Query: 604 GIHETTYSSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII- 431
G+HE Y SI+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S + +
Sbjct: 323 GLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAE 382
Query: 430 APPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 323
+VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 383 TASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 93.1 bits (221), Expect = 4e-20
Identities = 46/108 (42%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
Frame = -1
Query: 604 GIHETTYSSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 425
GI + + I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 424 P---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 299
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 83.0 bits (196), Expect = 4e-17
Identities = 47/116 (40%), Positives = 69/116 (59%), Gaps = 12/116 (10%)
Frame = -1
Query: 634 QPSFXGMEACGIHETTYSSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL-- 461
QP G E G+ E + +I DVDIRK LY VLSGG++MY G+ R++KEI L
Sbjct: 263 QPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWF 322
Query: 460 ------APSTM---KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 323
P+ + K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 323 ERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 58.4 bits (135), Expect = 1e-09
Identities = 27/107 (25%), Positives = 54/107 (50%)
Frame = -1
Query: 631 PSFXGMEACGIHETTYSSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPS 452
PS G++ GI E S + + ++ ++ L +N +++GG PG+ R+++E+T++ P
Sbjct: 605 PSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETRIKRELTSIMPV 664
Query: 451 TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 311
I + W G S + F+ ++++EY E GP +
Sbjct: 665 GSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 58.0 bits (134), Expect = 1e-09
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
Frame = -1
Query: 577 IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPST--------------MKI 440
+ +D+RK LY N VLSGG+T++ +R+Q+++ + + +
Sbjct: 315 VQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDV 374
Query: 439 KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 305
+I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 375 NVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 54.4 bits (125), Expect = 2e-08
Identities = 33/114 (28%), Positives = 52/114 (45%)
Frame = -1
Query: 643 LXSQPSFXGMEACGIHETTYSSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITA 464
L PS + GI E S+ +I+ L N V GG +PG R+ E+ +
Sbjct: 286 LLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSELRS 345
Query: 463 LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 302
LAP+ ++K+ P + W S + L + I++ EY E G +I+ RK
Sbjct: 346 LAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIMTRK 398
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -1
Query: 550 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 380
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 379 SLSTFQQMWISKQEYDESGPSIVHRK 302
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -1
Query: 403 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 302
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 478 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 368
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,694,045
Number of Sequences: 5004
Number of extensions: 51066
Number of successful extensions: 140
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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