Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C07
         (1180 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000F1EA7E Cluster: PREDICTED: similar to LOC495114 ...    28   6.6  
UniRef50_Q68DA7 Cluster: Formin-1; n=14; Theria|Rep: Formin-1 - ...    29   8.3  

>UniRef50_UPI0000F1EA7E Cluster: PREDICTED: similar to LOC495114
           protein; n=2; Danio rerio|Rep: PREDICTED: similar to
           LOC495114 protein - Danio rerio
          Length = 904

 Score = 27.9 bits (59), Expect(2) = 6.6
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 903 GGXPPPXXPPPPP 865
           G  PPP  PPPPP
Sbjct: 314 GSAPPPPPPPPPP 326



 Score = 25.0 bits (52), Expect(2) = 6.6
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -2

Query: 891 PPXXPPPPPXG 859
           PP  PPPPP G
Sbjct: 334 PPPPPPPPPPG 344


>UniRef50_Q68DA7 Cluster: Formin-1; n=14; Theria|Rep: Formin-1 -
           Homo sapiens (Human)
          Length = 1419

 Score = 29.1 bits (62), Expect(2) = 8.3
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -2

Query: 894 PPPXXPPPPPXGXFF 850
           PPP   PPPP G FF
Sbjct: 947 PPPGLAPPPPPGLFF 961



 Score = 23.4 bits (48), Expect(2) = 8.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 906 GGGXPPPXXPPPP 868
           G   PPP  PPPP
Sbjct: 900 GPPLPPPPPPPPP 912


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 647,284,603
Number of Sequences: 1657284
Number of extensions: 9987636
Number of successful extensions: 82669
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65190
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 117912272470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)